GAAP: A GUI-based Genome Assembly and Annotation Package.

ABSTRACT: Background: Next-generation sequencing (NGS) technologies are being continuously used for high-throughput sequencing data generation that requires easy-to-use GUI-based data analysis software. These kinds of software could be used in-parallel with sequencing for the automatic data analysis. At present, very few software are available for use and most of them are commercial, thus creating a gap between data generation and data analysis. Methods: GAAP is developed on the NodeJS platform that uses HTML, JavaScript as the front-end for communication with users. We have implemented FastQC and trimmomatic tool for quality checking and control. Velvet and Prodigal are integrated for genome assembly and gene prediction. The annotation will be done with the help of remot

SUBMITTER: Singla D 

PROVIDER: S-EPMC9878834 | biostudies-literature | 2022 Jun

REPOSITORIES: biostudies-literature