Migrate3D: Software for simplified post-tracking analysis of 3D and 2D cell migration data.

ABSTRACT: Migrate3D is a cell migration analysis tool whose purpose is to computationally process positional cell tracking data generated via other image acquisition/analysis software, and generate biologically meaningful results. The functionalities of Migrate3D include step-based calculations of each cell track, single-cell-level summary statistics, mean squared displacement analysis, and machine learning-based evaluation of the entire dataset and subpopulations of cells found within it. The parameters calculated within Migrate3D have been previously developed and validated by other groups, and were selected to facilitate extraction of the maximum depth of information possible from input datasets. Variables are user-adjustable to enable customized analyses of diverse motility patterns and cell typ

SUBMITTER: Kinahan MW 

PROVIDER: S-EPMC9882690 | biostudies-literature | 2023 Jan

REPOSITORIES: biostudies-literature