Dataset Information

Identification and functional characterization of imbalanced osteoarthritis-associated fibronectin splice variants.

ABSTRACT:

Objective

To identify FN1 transcripts associated with OA pathophysiology and investigate the downstream effects of modulating FN1 expression and relative transcript ratio.

Methods

FN1 transcriptomic data was obtained from our previously assessed RNA-seq dataset of lesioned and preserved OA cartilage samples from the Research osteoArthritis Articular Cartilage (RAAK) study. Differential transcript expression analysis was performed on all 27 FN1 transcripts annotated in the Ensembl database. Human primary chondrocytes were transduced with lentiviral particles containing short hairpin RNA (shRNA) targeting full-length FN1 transcripts or non-targeting shRNA. Subsequently, matrix deposition was induced in our 3D in vitro neo-cartilage model. Effects of changes in the FN1 transcript ratio on sulphated glycosaminoglycan (sGAG) deposition were investigated by Alcian blue staining and dimethylmethylene blue assay. Moreover, gene expression levels of 17 cartilage-relevant markers were determined by reverse transcription quantitative polymerase chain reaction.

Results

We identified 16 FN1 transcripts differentially expressed between lesioned and preserved cartilage. FN1-208, encoding migration-stimulating factor, was the most significantly differentially expressed protein coding transcript. Downregulation of full-length FN1 and a concomitant increased FN1-208 ratio resulted in decreased sGAG deposition as well as decreased ACAN and COL2A1 and increased ADAMTS-5, ITGB1 and ITGB5 gene expression levels.

Conclusion

We show that full-length FN1 downregulation and concomitant relative FN1-208 upregulation was unbeneficial for deposition of cartilage matrix, likely due to decreased availability of the classical RGD (Arg-Gly-Asp) integrin-binding site of fibronectin.

SUBMITTER: van Hoolwerff M

PROVIDER: S-EPMC9891405 | biostudies-literature | 2023 Feb

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Identification and functional characterization of imbalanced osteoarthritis-associated fibronectin splice variants.

van Hoolwerff Marcella M Tuerlings Margo M Wijnen Imke J L IJL Suchiman H Eka D HED Cats Davy D Mei Hailiang H Nelissen Rob G H H RGHH van der Linden-van der Zwaag Henrike M J HMJ Ramos Yolande F M YFM Coutinho de Almeida Rodrigo R Meulenbelt Ingrid I

Rheumatology (Oxford, England) 20230201 2

<h4>Objective</h4>To identify FN1 transcripts associated with OA pathophysiology and investigate the downstream effects of modulating FN1 expression and relative transcript ratio.<h4>Methods</h4>FN1 transcriptomic data was obtained from our previously assessed RNA-seq dataset of lesioned and preserved OA cartilage samples from the Research osteoArthritis Articular Cartilage (RAAK) study. Differential transcript expression analysis was performed on all 27 FN1 transcripts annotated in the Ensembl ...[more]

PMID: 35532170

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Dataset Information

Identification and functional characterization of imbalanced osteoarthritis-associated fibronectin splice variants.

Objective

Methods

Results

Conclusion

Publications

Identification and functional characterization of imbalanced osteoarthritis-associated fibronectin splice variants.

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