Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.

ABSTRACT:

Summary

The regulation of genes by cis-regulatory elements (CREs) is complex and differs between cell types. Visual analysis of large collections of chromatin profiles across diverse cell types, integrated with computational methods, can reveal meaningful biological insights. We developed Cistrome Explorer, a web-based interactive visual analytics tool for exploring thousands of chromatin profiles in diverse cell types. Integrated with the Cistrome Data Browser database which contains thousands of ChIP-seq, DNase-seq and ATAC-seq samples, Cistrome Explorer enables the discovery of patterns of CREs across cell types and the identification of transcription factor binding underlying these patterns.

Availability and implementation

Cistrome Explorer and its source code are availa

SUBMITTER: L'Yi S 

PROVIDER: S-EPMC9900209 | biostudies-literature | 2023 Feb

REPOSITORIES: biostudies-literature