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Systematic single-variant and gene-based association testing of thousands of phenotypes in 394,841 UK Biobank exomes.


ABSTRACT: Genome-wide association studies have successfully discovered thousands of common variants associated with human diseases and traits, but the landscape of rare variations in human disease has not been explored at scale. Exome-sequencing studies of population biobanks provide an opportunity to systematically evaluate the impact of rare coding variations across a wide range of phenotypes to discover genes and allelic series relevant to human health and disease. Here, we present results from systematic association analyses of 4,529 phenotypes using single-variant and gene tests of 394,841 individuals in the UK Biobank with exome-sequence data. We find that the discovery of genetic associations is tightly linked to frequency and is correlated with metrics of deleteriousness and natural selection. We highlight biological findings elucidated by these data and release the dataset as a public resource alongside the Genebass browser for rapidly exploring rare-variant association results.

SUBMITTER: Karczewski KJ 

PROVIDER: S-EPMC9903662 | biostudies-literature | 2022 Sep

REPOSITORIES: biostudies-literature

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Systematic single-variant and gene-based association testing of thousands of phenotypes in 394,841 UK Biobank exomes.

Karczewski Konrad J KJ   Solomonson Matthew M   Chao Katherine R KR   Goodrich Julia K JK   Tiao Grace G   Lu Wenhan W   Riley-Gillis Bridget M BM   Tsai Ellen A EA   Kim Hye In HI   Zheng Xiuwen X   Rahimov Fedik F   Esmaeeli Sahar S   Grundstad A Jason AJ   Reppell Mark M   Waring Jeff J   Jacob Howard H   Sexton David D   Bronson Paola G PG   Chen Xing X   Hu Xinli X   Goldstein Jacqueline I JI   King Daniel D   Vittal Christopher C   Poterba Timothy T   Palmer Duncan S DS   Churchhouse Claire C   Howrigan Daniel P DP   Zhou Wei W   Watts Nicholas A NA   Nguyen Kevin K   Nguyen Huy H   Mason Cara C   Farnham Christopher C   Tolonen Charlotte C   Gauthier Laura D LD   Gupta Namrata N   MacArthur Daniel G DG   Rehm Heidi L HL   Seed Cotton C   Philippakis Anthony A AA   Daly Mark J MJ   Davis J Wade JW   Runz Heiko H   Miller Melissa R MR   Neale Benjamin M BM  

Cell genomics 20220815 9


Genome-wide association studies have successfully discovered thousands of common variants associated with human diseases and traits, but the landscape of rare variations in human disease has not been explored at scale. Exome-sequencing studies of population biobanks provide an opportunity to systematically evaluate the impact of rare coding variations across a wide range of phenotypes to discover genes and allelic series relevant to human health and disease. Here, we present results from systema  ...[more]

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