Translational profile of coding and non-coding RNAs revealed by genome wide profiling of ribosome footprints in grapevine.

ABSTRACT: Translation is a crucial process during plant growth and morphogenesis. In grapevine (Vitis vinifera L.), many transcripts can be detected by RNA sequencing; however, their translational regulation is still largely unknown, and a great number of translation products have not yet been identified. Here, ribosome footprint sequencing was carried out to reveal the translational profile of RNAs in grapevine. A total of 8291 detected transcripts were divided into four parts, including the coding, untranslated regions (UTR), intron, and intergenic regions, and the 26 nt ribosome-protected fragments (RPFs) showed a 3 nt periodic distribution. Furthermore, the predicted proteins were identified and classified by GO analysis. More importantly, 7 heat shock-binding proteins were found to be in

SUBMITTER: Zhen Z 

PROVIDER: S-EPMC9944039 | biostudies-literature | 2023

REPOSITORIES: biostudies-literature