RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data.

ABSTRACT:

Background

Massive amounts of data are produced by combining next-generation sequencing with complex biochemistry techniques to characterize regulatory genomics profiles, such as protein-DNA interaction and chromatin accessibility. Interpretation of such high-throughput data typically requires different computation methods. However, existing tools are usually developed for a specific task, which makes it challenging to analyze the data in an integrative manner.

Results

We here describe the Regulatory Genomics Toolbox (RGT), a computational library for the integrative analysis of regulatory genomics data. RGT provides different functionalities to handle genomic signals and regions. Based on that, we developed several tools to perform distinct downstream analyses, including th

SUBMITTER: Li Z 

PROVIDER: S-EPMC9990262 | biostudies-literature | 2023 Mar

REPOSITORIES: biostudies-literature