Unknown

Dataset Information

0

ApoE Modifier Alleles for Alzheimer's Disease Discovered by Information Theory Dependency Measures: MIST Software Package.


ABSTRACT: Information theory-based measures of variable dependency (previously published) have been implemented into a software package, MIST. The design of the software and its potential uses are described, and a demonstration is presented in the discovery of modifier alleles of the ApoE gene in affecting Alzheimer's disease (AD) by analyzing the UK Biobank dataset. The modifier genes uncovered overlap strongly with genes found to be associated with AD. Others include many known to influence AD. We discuss a range of uses of the dependency calculations using MIST that can uncover additional genetic effects in similar complex datasets, like higher degrees of interaction and phenotypic pleiotropy.

SUBMITTER: Banman A 

PROVIDER: S-EPMC9993164 | biostudies-literature | 2023 Mar

REPOSITORIES: biostudies-literature

altmetric image

Publications

<i>ApoE</i> Modifier Alleles for Alzheimer's Disease Discovered by Information Theory Dependency Measures: MIST Software Package.

Banman Andrew A   Sakhanenko Nikita A NA   Kunert-Graf James J   Galas David J DJ  

Journal of computational biology : a journal of computational molecular cell biology 20221102 3


Information theory-based measures of variable dependency (previously published) have been implemented into a software package, MIST. The design of the software and its potential uses are described, and a demonstration is presented in the discovery of modifier alleles of the <i>ApoE</i> gene in affecting Alzheimer's disease (AD) by analyzing the UK Biobank dataset. The modifier genes uncovered overlap strongly with genes found to be associated with AD. Others include many known to influence AD. W  ...[more]

Similar Datasets

2020-12-05 | GSE162690 | GEO
| S-EPMC6298189 | biostudies-literature
| S-EPMC3840585 | biostudies-literature
| S-EPMC6391495 | biostudies-literature
| S-EPMC3005000 | biostudies-literature
| S-EPMC4608353 | biostudies-other
| S-EPMC4996692 | biostudies-literature
| S-EPMC7113135 | biostudies-literature
| S-EPMC9052203 | biostudies-literature
| S-EPMC3045528 | biostudies-literature