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Whole Genome Metabolism - Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4)


ABSTRACT:

Whole Genome Metabolism of "Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4)"
This is a whole genome metabolism model of Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000140296 .
Other models with the same genus include BMID000000010887 BMID000000010888 BMID000000010889 BMID000000010890 BMID000000010891 BMID000000010892 BMID000000010893 BMID000000010894 BMID000000010895 BMID000000010896 BMID000000010897 BMID000000010898 BMID000000010899 BMID000000010900 BMID000000073226 BMID000000073227 BMID000000073228 BMID000000073229 BMID000000073230 BMID000000073231 BMID000000073232 BMID000000073233 BMID000000073234 BMID000000073235 BMID000000073236 BMID000000073237 BMID000000073238 BMID000000073239 BMID000000073240 BMID000000073241 BMID000000073242 BMID000000073243 BMID000000073244 BMID000000073245 BMID000000073246 BMID000000073247 BMID000000073248 BMID000000073249 BMID000000073250 BMID000000073251 BMID000000073252 BMID000000073253 BMID000000073254 BMID000000073255 BMID000000073256 BMID000000073257 BMID000000073258 BMID000000073259 BMID000000073260 BMID000000073261 BMID000000073262 BMID000000073263 BMID000000073264 BMID000000073265 BMID000000073266 BMID000000073267 BMID000000073268 BMID000000073269 BMID000000073270 BMID000000073271 BMID000000073272 BMID000000073273 BMID000000073274 BMID000000073275 BMID000000073276 BMID000000073277 BMID000000073278 BMID000000073279 BMID000000073280 BMID000000073281 BMID000000073282 BMID000000073283 BMID000000073284 BMID000000073285 BMID000000073286 BMID000000073287 BMID000000073288 BMID000000073289 BMID000000073290 BMID000000073291 BMID000000073292 BMID000000073293 BMID000000073294 BMID000000073295 BMID000000073296 BMID000000073297 BMID000000073298 BMID000000073299 .
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

SUBMITTER: Path2Models project 

PROVIDER: BMID000000140296 | biostudies-other |

SECONDARY ACCESSION(S): 24180668

REPOSITORIES: biostudies-other

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Publications

Complete genome sequence of Paludibacter propionicigenes type strain (WB4).

Gronow Sabine S   Munk Christine C   Lapidus Alla A   Nolan Matt M   Lucas Susan S   Hammon Nancy N   Deshpande Shweta S   Cheng Jan-Fang JF   Tapia Roxane R   Han Cliff C   Goodwin Lynne L   Pitluck Sam S   Liolios Konstantinos K   Ivanova Natalia N   Mavromatis Konstantinos K   Mikhailova Natalia N   Pati Amrita A   Chen Amy A   Palaniappan Krishna K   Land Miriam M   Hauser Loren L   Chang Yun-Juan YJ   Jeffries Cynthia D CD   Brambilla Evelyne E   Rohde Manfred M   Göker Markus M   Detter John C JC   Woyke Tanja T   Bristow James J   Eisen Jonathan A JA   Markowitz Victor V   Hugenholtz Philip P   Kyrpides Nikos C NC   Klenk Hans-Peter HP  

Standards in genomic sciences 20110220 1


Paludibacter propionicigenes Ueki et al. 2006 is the type species of the genus Paludibacter, which belongs to the family Porphyromonadaceae. The species is of interest because of the position it occupies in the tree of life where it can be found in close proximity to members of the genus Dysgonomonas. This is the first completed genome sequence of a member of the genus Paludibacter and the third sequence from the family Porphyromonadaceae. The 3,685,504 bp long genome with its 3,054 protein-codi  ...[more]

Publication: 1/2

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