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Dataset Information

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Whole Genome Metabolism - Ruegeria sp. (strain TM1040)


ABSTRACT:

Whole Genome Metabolism of "Silicibacter sp. (strain TM1040)"
This is a whole genome metabolism model of Silicibacter sp. (strain TM1040).
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000140659 .
Other models with the same genus include BMID000000004196 BMID000000004197 BMID000000004198 BMID000000004199 BMID000000004200 BMID000000004201 BMID000000004202 BMID000000004203 BMID000000004204 BMID000000004205 BMID000000004206 BMID000000004207 BMID000000004208 BMID000000004209 BMID000000004210 BMID000000004211 BMID000000045362 BMID000000045363 BMID000000045364 BMID000000045365 BMID000000045366 BMID000000045367 BMID000000045368 BMID000000045369 BMID000000045370 BMID000000045371 BMID000000045372 BMID000000045373 BMID000000045374 BMID000000045375 BMID000000045376 BMID000000045377 BMID000000045378 BMID000000045379 BMID000000045380 BMID000000045381 BMID000000045382 BMID000000045383 BMID000000045384 BMID000000045385 BMID000000045386 BMID000000045387 BMID000000045388 BMID000000045389 BMID000000045390 BMID000000045391 BMID000000045392 BMID000000045393 BMID000000045394 BMID000000045395 BMID000000045396 BMID000000045397 BMID000000045398 BMID000000045399 BMID000000045400 BMID000000045401 BMID000000045402 BMID000000045403 BMID000000045404 BMID000000045405 BMID000000045406 BMID000000045407 BMID000000045408 BMID000000045409 BMID000000045410 BMID000000045411 BMID000000045412 BMID000000045413 BMID000000045414 BMID000000045415 BMID000000045416 BMID000000045417 BMID000000045418 BMID000000045419 BMID000000045420 BMID000000045421 BMID000000045422 BMID000000045423 BMID000000045424 BMID000000045425 BMID000000045426 BMID000000045427 BMID000000045428 BMID000000045429 BMID000000045430 BMID000000045431 BMID000000045432 BMID000000045433 BMID000000045434 BMID000000045435 BMID000000045436 BMID000000045437 BMID000000045438 BMID000000045439 BMID000000045440 BMID000000045441 BMID000000045442 BMID000000045443 BMID000000045444 BMID000000045445 BMID000000045446 BMID000000045447 BMID000000045448 BMID000000045449 BMID000000045450 BMID000000140623 BMID000000013208 BMID000000013209 BMID000000013210 BMID000000013211 BMID000000013212 BMID000000013213 BMID000000013214 BMID000000013215 BMID000000013216 BMID000000013217 BMID000000013218 BMID000000013219 BMID000000013220 BMID000000013221 BMID000000013222 BMID000000013223 BMID000000082477 BMID000000082478 BMID000000082479 BMID000000082480 BMID000000082481 BMID000000082482 BMID000000082483 BMID000000082484 BMID000000082485 BMID000000082486 BMID000000082487 BMID000000082488 BMID000000082489 BMID000000082490 BMID000000082491 BMID000000082492 BMID000000082493 BMID000000082494 BMID000000082495 BMID000000082496 BMID000000082497 BMID000000082498 BMID000000082499 BMID000000082500 BMID000000082501 BMID000000082502 BMID000000082503 BMID000000082504 BMID000000082505 BMID000000082506 BMID000000082507 BMID000000082508 BMID000000082509 BMID000000082510 BMID000000082511 BMID000000082512 BMID000000082513 BMID000000082514 BMID000000082515 BMID000000082516 BMID000000082517 BMID000000082518 BMID000000082519 BMID000000082520 BMID000000082521 BMID000000082522 BMID000000082523 BMID000000082524 BMID000000082525 BMID000000082526 BMID000000082527 BMID000000082528 BMID000000082529 BMID000000082530 BMID000000082531 BMID000000082532 BMID000000082533 BMID000000082534 BMID000000082535 BMID000000082536 BMID000000082537 BMID000000082538 BMID000000082539 BMID000000082540 BMID000000082541 BMID000000082542 BMID000000082543 BMID000000082544 BMID000000082545 BMID000000082546 BMID000000082547 BMID000000082548 BMID000000082549 BMID000000082550 BMID000000082551 BMID000000082552 BMID000000082553 BMID000000082554 BMID000000082555 BMID000000082556 BMID000000082557 BMID000000082558 BMID000000082559 BMID000000082560 BMID000000082561 BMID000000082562 BMID000000082563 BMID000000082564 .
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

SUBMITTER: Path2Models project 

PROVIDER: BMID000000140659 | biostudies-other |

SECONDARY ACCESSION(S): 24180668

REPOSITORIES: biostudies-other

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Publications


<h4>Background</h4>Systems biology projects and omics technologies have led to a growing number of biochemical pathway models and reconstructions. However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data.<h4>Results</h4>To increase the efficiency of model creation, the Path2Models project has automatically generated mathematical models from pathway representations using a suite of freely available software. Data sources  ...[more]

Publication: 1/2

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