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Whole Genome Metabolism - Selaginella moellendorffii

ABSTRACT:

Whole Genome Metabolism of "Selaginella moellendorffii"
This is a whole genome metabolism model of Selaginella moellendorffii.
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000141431 .
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

SUBMITTER: Path2Models project 

PROVIDER: BMID000000141431 | biostudies-other |

SECONDARY ACCESSION(S): 24180668

REPOSITORIES: biostudies-other

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Publications

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Banks Jo Ann JA   Nishiyama Tomoaki T   Hasebe Mitsuyasu M   Bowman John L JL   Gribskov Michael M   dePamphilis Claude C   Albert Victor A VA   Aono Naoki N   Aoyama Tsuyoshi T   Ambrose Barbara A BA   Ashton Neil W NW   Axtell Michael J MJ   Barker Elizabeth E   Barker Michael S MS   Bennetzen Jeffrey L JL   Bonawitz Nicholas D ND   Chapple Clint C   Cheng Chaoyang C   Correa Luiz Gustavo Guedes LG   Dacre Michael M   DeBarry Jeremy J   Dreyer Ingo I   Elias Marek M   Engstrom Eric M EM   Estelle Mark M   Feng Liang L   Finet Cédric C   Floyd Sandra K SK   Frommer Wolf B WB   Fujita Tomomichi T   Gramzow Lydia L   Gutensohn Michael M   Harholt Jesper J   Hattori Mitsuru M   Heyl Alexander A   Hirai Tadayoshi T   Hiwatashi Yuji Y   Ishikawa Masaki M   Iwata Mineko M   Karol Kenneth G KG   Koehler Barbara B   Kolukisaoglu Uener U   Kubo Minoru M   Kurata Tetsuya T   Lalonde Sylvie S   Li Kejie K   Li Ying Y   Litt Amy A   Lyons Eric E   Manning Gerard G   Maruyama Takeshi T   Michael Todd P TP   Mikami Koji K   Miyazaki Saori S   Morinaga Shin-ichi S   Murata Takashi T   Mueller-Roeber Bernd B   Nelson David R DR   Obara Mari M   Oguri Yasuko Y   Olmstead Richard G RG   Onodera Naoko N   Petersen Bent Larsen BL   Pils Birgit B   Prigge Michael M   Rensing Stefan A SA   Riaño-Pachón Diego Mauricio DM   Roberts Alison W AW   Sato Yoshikatsu Y   Scheller Henrik Vibe HV   Schulz Burkhard B   Schulz Christian C   Shakirov Eugene V EV   Shibagaki Nakako N   Shinohara Naoki N   Shippen Dorothy E DE   Sørensen Iben I   Sotooka Ryo R   Sugimoto Nagisa N   Sugita Mamoru M   Sumikawa Naomi N   Tanurdzic Milos M   Theissen Günter G   Ulvskov Peter P   Wakazuki Sachiko S   Weng Jing-Ke JK   Willats William W G T WW   Wipf Daniel D   Wolf Paul G PG   Yang Lixing L   Zimmer Andreas D AD   Zhu Qihui Q   Mitros Therese T   Hellsten Uffe U   Loqué Dominique D   Otillar Robert R   Salamov Asaf A   Schmutz Jeremy J   Shapiro Harris H   Lindquist Erika E   Lucas Susan S   Rokhsar Daniel D   Grigoriev Igor V IV  

Science (New York, N.Y.) 20110505 6032

Vascular plants appeared ~410 million years ago, then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We report here the genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first nonseed vascular plant genome reported. By comparing gene content in evolutionarily diverse taxa, we found that the transition from a gametophyte- to a sporophyte-dominated life cycle required far fewer new genes than the  ...[more]

PMID: 21551031

Publication: 1/2

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