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Dataset Information

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Whole Genome Metabolism - Danio rerio


ABSTRACT:

Whole Genome Metabolism of "Danio rerio"
This is a whole genome metabolism model of Danio rerio.
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000142036 .
Other models with the same genus include BMID000000013341 BMID000000013342 BMID000000013343 BMID000000013344 BMID000000013345 BMID000000013346 BMID000000013347 BMID000000013348 BMID000000013349 BMID000000013350 BMID000000013351 BMID000000013352 BMID000000013353 BMID000000013354 BMID000000013355 BMID000000013356 BMID000000013357 BMID000000013358 BMID000000013359 BMID000000013360 BMID000000013361 BMID000000013362 BMID000000013363 BMID000000013364 BMID000000013365 BMID000000013366 BMID000000013367 BMID000000013368 BMID000000013369 BMID000000013370 BMID000000013371 BMID000000013372 BMID000000013373 BMID000000013374 BMID000000013375 BMID000000013376 BMID000000013377 BMID000000013378 BMID000000013379 BMID000000013380 BMID000000013381 BMID000000013382 BMID000000013383 BMID000000013384 BMID000000013385 BMID000000013386 BMID000000013387 BMID000000013388 BMID000000013389 BMID000000013390 BMID000000013391 BMID000000013392 BMID000000013393 BMID000000013394 BMID000000013395 BMID000000013396 BMID000000013397 BMID000000013398 BMID000000013399 BMID000000013400 BMID000000013401 BMID000000013402 BMID000000013403 BMID000000013404 BMID000000013405 BMID000000013406 BMID000000013407 BMID000000013408 BMID000000083058 BMID000000083059 BMID000000083060 BMID000000083061 BMID000000083062 BMID000000083063 BMID000000083064 BMID000000083065 BMID000000083066 BMID000000083067 BMID000000083068 BMID000000083069 BMID000000083070 BMID000000083071 BMID000000083072 BMID000000083073 BMID000000083074 BMID000000083075 BMID000000083076 BMID000000083077 BMID000000083078 BMID000000083079 BMID000000083080 BMID000000083081 BMID000000083082 BMID000000083083 BMID000000083084 BMID000000083085 BMID000000083086 BMID000000083087 BMID000000083088 BMID000000083089 BMID000000083090 BMID000000083091 BMID000000083092 BMID000000083093 BMID000000083094 BMID000000083095 BMID000000083096 BMID000000083097 BMID000000083098 BMID000000083099 BMID000000083100 BMID000000083101 BMID000000083102 BMID000000083103 BMID000000083104 BMID000000083105 BMID000000083106 BMID000000083107 BMID000000083108 BMID000000083109 BMID000000083110 BMID000000083111 BMID000000083112 BMID000000083113 BMID000000083114 BMID000000083115 BMID000000083116 BMID000000083117 BMID000000083118 BMID000000083119 BMID000000083120 BMID000000083121 BMID000000083122 BMID000000083123 BMID000000083124 BMID000000083125 BMID000000083126 BMID000000083127 BMID000000083128 BMID000000083129 BMID000000083130 BMID000000083131 BMID000000083132 BMID000000083133 BMID000000083134 BMID000000083135 BMID000000083136 BMID000000083137 BMID000000083138 BMID000000083139 BMID000000083140 BMID000000083141 BMID000000083142 BMID000000083143 BMID000000083144 .
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

SUBMITTER: Path2Models project 

PROVIDER: BMID000000142036 | biostudies-other |

SECONDARY ACCESSION(S): 24180668

REPOSITORIES: biostudies-other

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Publications

The zebrafish reference genome sequence and its relationship to the human genome.

Howe Kerstin K   Clark Matthew D MD   Torroja Carlos F CF   Torrance James J   Berthelot Camille C   Muffato Matthieu M   Collins John E JE   Humphray Sean S   McLaren Karen K   Matthews Lucy L   McLaren Stuart S   Sealy Ian I   Caccamo Mario M   Churcher Carol C   Scott Carol C   Barrett Jeffrey C JC   Koch Romke R   Rauch Gerd-Jörg GJ   White Simon S   Chow William W   Kilian Britt B   Quintais Leonor T LT   Guerra-Assunção José A JA   Zhou Yi Y   Gu Yong Y   Yen Jennifer J   Vogel Jan-Hinnerk JH   Eyre Tina T   Redmond Seth S   Banerjee Ruby R   Chi Jianxiang J   Fu Beiyuan B   Langley Elizabeth E   Maguire Sean F SF   Laird Gavin K GK   Lloyd David D   Kenyon Emma E   Donaldson Sarah S   Sehra Harminder H   Almeida-King Jeff J   Loveland Jane J   Trevanion Stephen S   Jones Matt M   Quail Mike M   Willey Dave D   Hunt Adrienne A   Burton John J   Sims Sarah S   McLay Kirsten K   Plumb Bob B   Davis Joy J   Clee Chris C   Oliver Karen K   Clark Richard R   Riddle Clare C   Elliot David D   Threadgold Glen G   Harden Glenn G   Ware Darren D   Begum Sharmin S   Mortimore Beverley B   Kerry Giselle G   Heath Paul P   Phillimore Benjamin B   Tracey Alan A   Corby Nicole N   Dunn Matthew M   Johnson Christopher C   Wood Jonathan J   Clark Susan S   Pelan Sarah S   Griffiths Guy G   Smith Michelle M   Glithero Rebecca R   Howden Philip P   Barker Nicholas N   Lloyd Christine C   Stevens Christopher C   Harley Joanna J   Holt Karen K   Panagiotidis Georgios G   Lovell Jamieson J   Beasley Helen H   Henderson Carl C   Gordon Daria D   Auger Katherine K   Wright Deborah D   Collins Joanna J   Raisen Claire C   Dyer Lauren L   Leung Kenric K   Robertson Lauren L   Ambridge Kirsty K   Leongamornlert Daniel D   McGuire Sarah S   Gilderthorp Ruth R   Griffiths Coline C   Manthravadi Deepa D   Nichol Sarah S   Barker Gary G   Whitehead Siobhan S   Kay Michael M   Brown Jacqueline J   Murnane Clare C   Gray Emma E   Humphries Matthew M   Sycamore Neil N   Barker Darren D   Saunders David D   Wallis Justene J   Babbage Anne A   Hammond Sian S   Mashreghi-Mohammadi Maryam M   Barr Lucy L   Martin Sancha S   Wray Paul P   Ellington Andrew A   Matthews Nicholas N   Ellwood Matthew M   Woodmansey Rebecca R   Clark Graham G   Cooper James D J   Tromans Anthony A   Grafham Darren D   Skuce Carl C   Pandian Richard R   Andrews Robert R   Harrison Elliot E   Kimberley Andrew A   Garnett Jane J   Fosker Nigel N   Hall Rebekah R   Garner Patrick P   Kelly Daniel D   Bird Christine C   Palmer Sophie S   Gehring Ines I   Berger Andrea A   Dooley Christopher M CM   Ersan-Ürün Zübeyde Z   Eser Cigdem C   Geiger Horst H   Geisler Maria M   Karotki Lena L   Kirn Anette A   Konantz Judith J   Konantz Martina M   Oberländer Martina M   Rudolph-Geiger Silke S   Teucke Mathias M   Lanz Christa C   Raddatz Günter G   Osoegawa Kazutoyo K   Zhu Baoli B   Rapp Amanda A   Widaa Sara S   Langford Cordelia C   Yang Fengtang F   Schuster Stephan C SC   Carter Nigel P NP   Harrow Jennifer J   Ning Zemin Z   Herrero Javier J   Searle Steve M J SM   Enright Anton A   Geisler Robert R   Plasterk Ronald H A RH   Lee Charles C   Westerfield Monte M   de Jong Pieter J PJ   Zon Leonard I LI   Postlethwait John H JH   Nüsslein-Volhard Christiane C   Hubbard Tim J P TJ   Roest Crollius Hugues H   Rogers Jane J   Stemple Derek L DL  

Nature 20130417 7446


Zebrafish have become a popular organism for the study of vertebrate gene function. The virtually transparent embryos of this species, and the ability to accelerate genetic studies by gene knockdown or overexpression, have led to the widespread use of zebrafish in the detailed investigation of vertebrate gene function and increasingly, the study of human genetic disease. However, for effective modelling of human genetic disease it is important to understand the extent to which zebrafish genes an  ...[more]

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