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Whole Genome Metabolism - Sarcophilus harrisii

ABSTRACT:

Whole Genome Metabolism of "Sarcophilus harrisii (Tasmanian devil)"
This is a whole genome metabolism model of Sarcophilus harrisii (Tasmanian devil).
This model has been automatically generated by the SuBliMinaL Toolbox and libAnnotationSBML using information coming from from KEGG (release 66, April 2013, accessed via the resource's web services interface) and, where relevant, augmented with metabolic pathway information extracted from MetaCyc (version 17.0, March 2013).
This model has been produced by the path2models project and is currently hosted on BioModels Database and identified by: BMID000000142759 .
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

SUBMITTER: Path2Models project 

PROVIDER: BMID000000142759 | biostudies-other |

SECONDARY ACCESSION(S): 24180668

REPOSITORIES: biostudies-other

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Publications

Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer.

Murchison Elizabeth P EP   Schulz-Trieglaff Ole B OB   Ning Zemin Z   Alexandrov Ludmil B LB   Bauer Markus J MJ   Fu Beiyuan B   Hims Matthew M   Ding Zhihao Z   Ivakhno Sergii S   Stewart Caitlin C   Ng Bee Ling BL   Wong Wendy W   Aken Bronwen B   White Simon S   Alsop Amber A   Becq Jennifer J   Bignell Graham R GR   Cheetham R Keira RK   Cheng William W   Connor Thomas R TR   Cox Anthony J AJ   Feng Zhi-Ping ZP   Gu Yong Y   Grocock Russell J RJ   Harris Simon R SR   Khrebtukova Irina I   Kingsbury Zoya Z   Kowarsky Mark M   Kreiss Alexandre A   Luo Shujun S   Marshall John J   McBride David J DJ   Murray Lisa L   Pearse Anne-Maree AM   Raine Keiran K   Rasolonjatovo Isabelle I   Shaw Richard R   Shaw Richard R   Tedder Philip P   Tregidgo Carolyn C   Vilella Albert J AJ   Wedge David C DC   Woods Gregory M GM   Gormley Niall N   Humphray Sean S   Schroth Gary G   Smith Geoffrey G   Hall Kevin K   Searle Stephen M J SM   Carter Nigel P NP   Papenfuss Anthony T AT   Futreal P Andrew PA   Campbell Peter J PJ   Yang Fengtang F   Bentley David R DR   Evers Dirk J DJ   Stratton Michael R MR  

Cell 20120201 4

The Tasmanian devil (Sarcophilus harrisii), the largest marsupial carnivore, is endangered due to a transmissible facial cancer spread by direct transfer of living cancer cells through biting. Here we describe the sequencing, assembly, and annotation of the Tasmanian devil genome and whole-genome sequences for two geographically distant subclones of the cancer. Genomic analysis suggests that the cancer first arose from a female Tasmanian devil and that the clone has subsequently genetically dive  ...[more]

PMID: 22341448

Publication: 1/2

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