Unknown

Dataset Information

0

Seif2019 - Strain-specific metabolic models of Salmonella

ABSTRACT: Seif, 2019 - Systems biology and pangenome of Salmonella O-antigensStrain-specific metabolic models of Salmonella strains updated with O-antigen metabolic pathways.Locus-tags are updated in this version of the models to include both the prokka annotations and the refseq locus tags.

SUBMITTER: Yara Seif 

PROVIDER: MODEL1907100002 | biostudies-other |

SECONDARY ACCESSION(S): 31455646

REPOSITORIES: biostudies-other

Json Xml
altmetric image

Publications

Systems Biology and Pangenome of <i>Salmonella</i> O-Antigens.

Seif Yara Y   Monk Jonathan M JM   Machado Henrique H   Kavvas Erol E   Palsson Bernhard O BO  

mBio 20190827 4

O-antigens are glycopolymers in lipopolysaccharides expressed on the cell surface of Gram-negative bacteria. Variability in the O-antigen structure constitutes the basis for the establishment of the serotyping schema. We pursued a two-pronged approach to define the basis for O-antigen structural diversity. First, we developed a bottom-up systems biology approach to O-antigen metabolism by building a reconstruction of <i>Salmonella</i> O-antigen biosynthesis and used it to (i) update 410 existing  ...[more]

Similar Datasets

Unknown Seif2018 - Strain specific Salmonella Genome Scale Models (GEMs)
| MODEL1807280001 | biostudies-other
Unknown Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus.
| S-EPMC8241996 | biostudies-literature
Unknown Bactabolize is a tool for high-throughput generation of bacterial strain-specific metabolic models.
| S-EPMC10564454 | biostudies-literature
Models Seif2019 - Strain-specific metabolic models of Salmonella
2019-09-11 | MODEL1907100002 | BioModels
Unknown Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits.
| S-EPMC6138749 | biostudies-literature
Models Seif2018 - Strain specific Salmonella Genome Scale Models (GEMs)
2024-12-21 | MODEL1807280001 | BioModels
Unknown StanDep: Capturing transcriptomic variability improves context-specific metabolic models.
| S-EPMC7244210 | biostudies-literature
Unknown IDENTIFYING CANCER SPECIFIC METABOLIC SIGNATURES USING CONSTRAINT-BASED MODELS.
| S-EPMC5173378 | biostudies-literature
Unknown A workflow for generating multi-strain genome-scale metabolic models of prokaryotes.
| S-EPMC7017905 | biostudies-literature
Unknown Influence of Salmonella specific bacteriophages (O1; S16) on the shedding of naturally occurring Salmonella and an orally applied Salmonella Eastbourne strain in bearded dragons (Pogona vitticeps).
| S-EPMC8025629 | biostudies-literature