Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Guo2016 - Bacillus licheniformis (iWX1009)

ABSTRACT: FROG and miniFROG reports are given for the genome-scale metabolic network of Bacillus licheniformis WX-02. The model iWX1009 contains 1009 genes, 1141 metabolites and 1762 reactions and is the study of poly-γ-glutamic acid (γ-PGA) synthesis. The model can be found in the Supplementary data of the Guo et al, 2016 paper cited here.

SUBMITTER: Tanisha Malpani

PROVIDER: MODEL2408030002 | biostudies-other |

SECONDARY ACCESSION(S): 10.1016/j.resmic.2015.12.005

REPOSITORIES: biostudies-other

ACCESS DATA

Json Xml

Similar Datasets

Genome Sequences of 12 Spore-Forming Bacillus Species, Comprising Bacillus coagulans, Bacillus licheniformis, Bacillus amyloliquefaciens, Bacillus sporothermodurans, and Bacillus vallismortis, Isolated from Foods.

Project description: Not available

| S-EPMC4866836 | biostudies-literature

Bacillus subtilis WalR (YycF) ChIP-chip Bacillus subtilis; Bacillus subtilis subsp. subtilis str. 168

Project description:Identification of the specific WalR (YycF) binding regions on the B. subtilis chromosome during exponential and phosphate starvation growth phases. The data serves to extend the WalRK regulon in Bacillus subtilis and its role in cell wall metabolism, as well as implying a role in several other cellular processes.

2015-01-26 | GSE65272 | GEO

Comparative Genomics of Bacillus cereus and Bacillus anthracis

Project description:The aim of the study was to carry out a CGH study utilizing a set of 39 diverse Bacillus isolates. Thirty four B. cereus and five B. anthracis strains and isolates were chosen so as to represent different lineages based on previous characterizations, including MLEE and MLST (Helgason, Okstad et al. 2000; Helgason, Tourasse et al. 2004). They represent the spectrum of B. cereus phenotypic diversity by including soil, dairy and periodontal isolates in addition to virulent B. anthracis strains.

2009-11-25 | GSE19068 | GEO

Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis.

Project description: Not available

| S-EPMC154536 | biostudies-literature

Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.

Project description: Not available

| S-EPMC152626 | biostudies-literature

Detection and Identification of <i>Bacillus cereus, Bacillus cytotoxicus, Bacillus thuringiensis, Bacillus mycoides</i> and <i>Bacillus weihenstephanensis</i> via Machine Learning Based FTIR Spectroscopy.

Project description: Not available

| S-EPMC6498184 | biostudies-literature

Comparative Genome Analysis of Bacillus sporothermodurans with Its Closest Phylogenetic Neighbor, Bacillus oleronius, and Bacillus cereus and Bacillus subtilis Groups.

Project description: Not available

| S-EPMC7464528 | biostudies-literature

Bacillus Stress Responses

Project description:Bacillus subtilis exhibits a complex adaptive response to low levels of peroxides. We used global transcriptional profiling to monitor the magnitude and kinetics of changes in the mRNA population after exposure to either hydrogen peroxide (H2O2) or tert-butyl peroxide (t-buOOH). The peroxide stimulons could be largely accounted for by three regulons controlled by the PerR, B, and OhrR transcription factors. Three members of the PerR regulon (katA, mrgA, and zosA) were strongly induced by H2O2 and weakly induced by t-buOOH. The remaining members of the PerR regulon were only modestly up-regulated by peroxide treatment. Overall, the magnitude of peroxide induction of PerR regulon genes corresponded well with the extent of derepression in a perR mutant strain. The B regulon was activated by 58 µM H2O2 but not by 8 µM H2O2 and was strongly activated by either t-buOOH or, in a control experiment, tert-butyl alcohol. Apart from the B regulon there was a single gene, ohrA, that was strongly and rapidly induced by t-buOOH exposure. This gene, controlled by the peroxide-sensing repressor OhrR, was not induced by any of the other conditions tested. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: Logical Set

2005-08-16 | GSE3138 | GEO

Bacillus PerR set

Project description:Comparison between perR and wild type Bacillus Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: Logical Set

2005-08-16 | GSE3139 | GEO

Phages preying on Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis: past, present and future.

Project description: Not available

| S-EPMC4113786 | biostudies-literature