Dataset Information
Feist2007_EcMetabol_flux2
Ontology highlight
ABSTRACT: This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.. organism E. coli K-12 MG1655model iAF1260Biomass Objective Function (BOF) Ec_biomass_iAF1260_core_59p81M (E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate)flux balance analysis objective maximize BOFGrowth Associated Maintenance (GAM) 59.81 mmol ATP gDW-1Non-Growth Associated Maintenance (NGAM) 8.39 mmol ATP gDW-1 hr-1media conditions computational minimal mediacarbon source 11.0 mmol glucose gDw-1 hr-1aerobic or anaerobic 18.2 mmol O2 gDw-1 hr-1additional constraintsreactions constrained to zero 152 reactions identified to be unavailable to the cell under glucose aerobic conditionsflux split between reaction pairs NDH-1:NDH-2 is 1:1 (3 pairs of reactions - different quinone usage) NADH10:NADH17pp, NADH5:NADH16pp, NADH9:NADH18pp
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
ORGANISM(S): Escherichia coli
SUBMITTER: Molecular Systems Biology
PROVIDER: MODEL3023641273 | biostudies-other |
SECONDARY ACCESSION(S): 17593909
REPOSITORIES: biostudies-other
Publications
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.
Molecular systems biology 20070626
An updated genome-scale reconstruction of the metabolic network in Escherichia coli K-12 MG1655 is presented. This updated metabolic reconstruction includes: (1) an alignment with the latest genome annotation and the metabolic content of EcoCyc leading to the inclusion of the activities of 1260 ORFs, (2) characterization and quantification of the biomass components and maintenance requirements associated with growth of E. coli and (3) thermodynamic information for the included chemical reactions ...[more]