Dataset Information
Smolen2004_CircClock
Ontology highlight
ABSTRACT: No inititial conditions are specified in the paper. Because there is a basal rate of transcription for each gene, it doesn't matter much. With the agreement of Paul Smolen, I put all the initial concentration at 0.001 nanomoles. N Le Novère. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
ORGANISM(S): Drosophila melanogaster
SUBMITTER: Lucian Smith
PROVIDER: MODEL6619579403 | biostudies-other |
SECONDARY ACCESSION(S): 15111397
REPOSITORIES: biostudies-other
Publications
Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK.
Biophysical journal 20040501 5
A model of Drosophila circadian rhythm generation was developed to represent feedback loops based on transcriptional regulation of per, Clk (dclock), Pdp-1, and vri (vrille). The model postulates that histone acetylation kinetics make transcriptional activation a nonlinear function of [CLK]. Such a nonlinearity is essential to simulate robust circadian oscillations of transcription in our model and in previous models. Simulations suggest that two positive feedback loops involving Clk are not ess ...[more]