Unknown

Dataset Information

0

SiSp: predicting different splicing modes of individual cassette exons

ABSTRACT: The SiSp model predicts splicing patterns based on a genomic sequence (800bp) at the center of the alternative exon of a cassette exon. It takes methylation into account by handling methylated cytosine as 5th base, and operates on a single-cell level.

SUBMITTER: Lara Urban 

PROVIDER: S-BAIR2 | biostudies-other |

REPOSITORIES: biostudies-other

Json Xml

Similar Datasets

Unknown Comparative component analysis of exons with different splicing frequencies.
| S-EPMC2671145 | biostudies-literature
Unknown Analysis of differential splicing suggests different modes of short-term splicing regulation.
| S-EPMC4908367 | biostudies-literature
Unknown TRAP150 activates splicing in composite terminal exons.
| S-EPMC4227790 | biostudies-literature
Unknown Short cryptic exons mediate recursive splicing in Drosophila.
| S-EPMC6709686 | biostudies-literature
Unknown Hotspot exons are common targets of splicing perturbations.
| S-EPMC8115636 | biostudies-literature
Unknown U5 snRNA Interactions With Exons Ensure Splicing Precision.
| S-EPMC8283771 | biostudies-literature
Unknown Single Antisense Oligonucleotides Correct Diverse Splicing Mutations in Hotspot Exons.
| S-EPMC12207475 | biostudies-literature
Unknown Multifactorial interplay controls the splicing profile of Alu-derived exons.
| S-EPMC2423157 | biostudies-literature
Unknown The importance of DNA methylation of exons on alternative splicing.
| S-EPMC6140467 | biostudies-literature
Unknown Splicing activates transcription from weak promoters upstream of alternative exons.
| S-EPMC10256964 | biostudies-literature