Dataset Information

Fusing Biodiversity Metrics into Investigations of Daily Life: Illustrations and Recommendations With Emodiversity.

ABSTRACT: Functionalist emotion and ecological systems theories suggest emodiversity-the variety and relative abundance of individuals' emotion experiences-is beneficial for psychological and physical health and may change with age. This paper examines and provides recommendations for operationalization of diversity-type intraindividual variability (IIV) constructs using intensive longitudinal data, and demonstrates the utility of emodiversity by examining its links to physical health moderated by mean levels of emotion and age.Using data from a daily diary study of 138 adults (age 40 to 65 years), we consider how item selection, response scale, choice of diversity index, and number of occasions enable/constrain mapping to theory, measurement reliability, and empirical inquiry.Item selection and response scale had limited influence on rank-order differences in diversity. Reliable measurement (r ? .8) required a minimum of 6 to 12 occasions depending on choice of index, theoretical conception, study design, and distribution of diversity scores. The empirical findings suggest mean level of negative affect, rather than age, moderates the relation between negative emodiversity and health.This study provides recommendations for the calculation of diversity-type IIV constructs and illustrates the potential for study of emodiversity to contribute to understanding of successful aging.

SUBMITTER: Benson L

PROVIDER: S-EPMC5939690 | biostudies-other | 2017 Dec

REPOSITORIES: biostudies-other

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Fusing Biodiversity Metrics into Investigations of Daily Life: Illustrations and Recommendations With Emodiversity.

Benson Lizbeth L Ram Nilam N Almeida David M DM Zautra Alex J AJ Ong Anthony D AD

The journals of gerontology. Series B, Psychological sciences and social sciences 20171201 1

<h4>Objectives</h4>Functionalist emotion and ecological systems theories suggest emodiversity-the variety and relative abundance of individuals' emotion experiences-is beneficial for psychological and physical health and may change with age. This paper examines and provides recommendations for operationalization of diversity-type intraindividual variability (IIV) constructs using intensive longitudinal data, and demonstrates the utility of emodiversity by examining its links to physical health m ...[more]

PMID: 28379556

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Project description:Formalin-fixed, paraffin-embedded (FFPE) tissues have many advantages for identification of risk biomarkers, including wide availability and potential for extended follow-up endpoints. However, RNA derived from archival FFPE samples has limited quality. Here we identified parameters that determine which FFPE samples have the potential for successful RNA extraction, library preparation, and generation of usable RNAseq data. We optimized library preparation protocols designed for use with FFPE samples using seven FFPE and Fresh Frozen replicate pairs, and tested optimized protocols using a study set of 130 FFPE biopsies from women with benign breast disease. Metrics from RNA extraction and preparation procedures were collected and compared with bioinformatics sequencing summary statistics. Finally, a decision tree model was built to learn the relationship between pre-sequencing lab metrics and qc pass/fail status as determined by bioinformatics metrics.. Samples that failed bioinformatics qc tended to have low median sample-wise correlation within the cohort (Spearman correlation < 0.75), low number of reads mapped to gene regions (< 25 million), or low number of detectable genes (11,400 # of detected genes with TPM > 4). The median RNA concentration and pre-capture library Qubit values for qc failed samples were 18.9 ng/ul and 2.08 ng/ul respectively, which were significantly lower than those of qc pass samples (40.8 ng/ul and 5.82 ng/ul). We built a decision tree model based on input RNA concentration, input library qubit values, and achieved an F score of 0.848 in predicting QC status (pass/fail) of FFPE samples. We provide a bioinformatics quality control recommendation for FFPE samples from breast tissue by evaluating bioinformatic and sample metrics. Our results suggest a minimum concentration of 25 ng/ul FFPE-extracted RNA for library preparation and 1.7 ng/ul pre-capture library output to achieve adequate RNA-seq data for downstream bioinformatics analysis.

Dataset Information

Fusing Biodiversity Metrics into Investigations of Daily Life: Illustrations and Recommendations With Emodiversity.

Publications

Fusing Biodiversity Metrics into Investigations of Daily Life: Illustrations and Recommendations With Emodiversity.

Similar Datasets

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