Unknown

Dataset Information

0

The UCSC Genome Browser database: update 2011.


ABSTRACT: The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for a wide variety of organisms. The Browser also has many tools for visualizing, comparing and analyzing both publicly available and user-generated genomic data sets, aligning sequences and uploading user data. Among the features released this year are a gene search tool and annotation track drag-reorder functionality as well as support for BAM and BigWig/BigBed file formats. New display enhancements include overlay of multiple wiggle tracks through use of transparent coloring, options for displaying transformed wiggle data, a 'mean+whiskers' windowing function for display of wiggle data at high zoom levels, and more color schemes for microarray data. New data highlights include seven new genome assemblies, a Neandertal genome data portal, phenotype and disease association data, a human RNA editing track, and a zebrafish Conservation track. We also describe updates to existing tracks.

SUBMITTER: Fujita PA 

PROVIDER: S-EPMC3242726 | BioStudies | 2011-01-01

SECONDARY ACCESSION(S): NA12891

REPOSITORIES: biostudies

Similar Datasets

2010-01-01 | S-EPMC2808870 | BioStudies
2013-01-01 | S-EPMC3531082 | BioStudies
2016-01-01 | S-EPMC4848401 | BioStudies
2019-01-01 | S-EPMC6323953 | BioStudies
2015-01-01 | S-EPMC4383971 | BioStudies
2020-01-01 | S-EPMC7145642 | BioStudies
2014-01-01 | S-EPMC4318873 | BioStudies
2018-01-01 | S-EPMC5753355 | BioStudies
1000-01-01 | S-EPMC2922891 | BioStudies
2011-01-01 | S-EPMC3222792 | BioStudies