Unknown

Dataset Information

0

Data on partial polyhydroxyalkanoate synthase genes (phaC) mined from Aaptos aaptos marine sponge-associated bacteria metagenome.


ABSTRACT: We report data associated with the identification of three polyhydroxyalkanoate synthase genes (phaC) isolated from the marine bacteria metagenome of Aaptos aaptos marine sponge in the waters of Bidong Island, Terengganu, Malaysia. Our data describe the extraction of bacterial metagenome from sponge tissue, measurement of purity and concentration of extracted metagenome, polymerase chain reaction (PCR)-mediated amplification using degenerate primers targeting Class I and II phaC genes, sequencing at First BASE Laboratories Sdn Bhd, and phylogenetic analysis of identified and known phaC genes. The partial nucleotide sequences were aligned, refined, compared with the Basic Local Alignment Search Tool (BLAST) databases, and released online in GenBank. The data include the identified partial putative phaC and their GenBank accession numbers, which are Rhodocista sp. phaC (MF457754), Pseudomonas sp. phaC (MF437016), and an uncultured bacterium AR5-9d_16 phaC (MF457753).

SUBMITTER: Amelia TSM 

PROVIDER: S-EPMC5694960 | BioStudies | 2018-01-01

REPOSITORIES: biostudies

Similar Datasets

1999-01-01 | S-EPMC91534 | BioStudies
2012-01-01 | S-EPMC3347165 | BioStudies
2017-01-01 | S-EPMC5509742 | BioStudies
2001-01-01 | S-EPMC95313 | BioStudies
2020-01-01 | S-EPMC7214940 | BioStudies
2018-01-01 | S-EPMC6403647 | BioStudies
2013-01-01 | S-EPMC3908369 | BioStudies
1000-01-01 | S-EPMC5452819 | BioStudies
2019-01-01 | S-EPMC6593219 | BioStudies
2014-01-01 | S-EPMC4278215 | BioStudies