Browse
Submit Data
Databases
API
Help

Dataset Information

4 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Establishment of a method for evaluating the intestinal environment by integrating studies about bacterial flora in the intestine

ABSTRACT: Primary outcome(s): Development of an automatic bacterial flora evaluation program based on the indices obtained from comprehensive integrated analysis

DISEASE(S): Healthy Individuals Without Diseases, Inflammatory Bowel Disease, Diabetes, Non-alcoholic Fatty Liver Disease/non-alcoholic Steatohepatitis, Inflammatory Bowel Disease, Irritable Bowel Syndrome, Neuroimmune Diseases, Patients With Carcinoma Using Immune Checkpoint Inhibitors For Treatment, Colorectal Cancer, And The Elderly

PROVIDER: 2661190 | ecrin-mdr-crc |

REPOSITORIES: ECRIN MDR

ACCESS DATA

Json Xml

Similar Datasets

Association between colorectal cancer and bacterial flora

Project description:Primary outcome(s): The difference between bacterial flora in colorectal cancer tissue and non-neoplastic tissue

| 2647382 | ecrin-mdr-crc

Changes of intestinal bacterial flora in colon carcinogenesis

Project description:Primary outcome(s): Difference of bacterial flora between colon cancer, adenoma and nomal mucosa

| 2631552 | ecrin-mdr-crc

C. elegans genomic response to Konza Prairie Soil bacterial environment

Project description:Here we have compared adult wildtype (N2) C. elegans gene expression when grown on different bacterial environments/fod sources in an effort to model naturally occuring nematode-bacteria interactions at the Konza Prairie. We hypothesize that human-induced changes to natural environments, such as the addition of nitrogen fertalizer, have effects on the bacterial community in soils and this drives downstream changes in the structure on soil bacterial-feeding nematode community structure. Here we have used transcriptional profiling to identify candidate genes involved in the interaction of nematodes and bacteria in nature.

2009-05-02 | GSE15923 | GEO

Establishment of a method to rapidly assay bacterial persister metabolism.

Project description: Not available

| S-EPMC3754326 | biostudies-literature

Bacterial community of zebrafish intestine Metagenome

Project description:Bacterial community of zebrafish intestine Metagenome Metagenome

| PRJNA794972 | ENA

A simple, cost-effective, and robust method for rRNA depletion in RNA-sequencing studies

Project description:These experiments were designed to quantify depletion of rRNA sequencing reads from bacterial RNA-seq libraries and verify that mRNA sequencing reads were not altered. Specifically, we tested an rRNA depletion method using custom-designed biotinylated oligonucleotides and compared these results to undepleted (total RNA) libraries and libraries made with the previously-available Ribo-Zero kit (Illumina).

2019-12-28 | GSE142656 | GEO

Observation study of the relationship between intestinal bacterial flora and therapeutic effect or adverse events on advanced non-small cell lung cancer patients treated with nivolumab.

Project description:Primary outcome(s): Relationship between intestinal bacterial flora and therapeutic effect of nivolumab.

| 2641596 | ecrin-mdr-crc

Bacterial DNA normalisation in microbiome studies

Project description:Exploring the impact of bacterial DNA variation in fish microbiome studies

| PRJEB33241 | ENA

In planta bacterial RNA-Seq with bacterial isolation.

Project description:Plant pathogens can cause serious diseases that impact global agriculture1. Understanding how the plant immune system naturally restricts pathogen infection holds a key to sustainable disease control in modern agricultural practices. However, despite extensive studies into the molecular and genetic basis of plant defense against pathogens since the 1950s2,3, one of the most fundamental questions in plant pathology remains unanswered: how resistant plants halt pathogen growth during immune activation. In the case of bacterial infections, a major bottleneck is an inability to determine the global bacterial transcriptome and metabolic responses in planta. Here, we developed an innovative pipeline that allows for in planta high-resolution bacterial transcriptome analysis with RNA-Seq, using the model plant Arabidopsis thaliana and the foliar bacterial pathogen Pseudomonas syringae. We examined a total of 27 combinations of plant immunity and bacterial virulence mutants to gain an unprecedented insight into the bacterial transcriptomic responses during plant immunity. We were able to identify specific bacterial transcriptomic signatures that are linked to bacterial inhibition during two major forms of plant immunity: pattern-triggered immunity and effector-triggered immunity. Among them, regulation of a P. syringae sigma factor gene, involved in iron regulation and an unknown process(es), was found to play a causative role in bacterial restriction during plant immunity. This study unlocked the enigmatic mechanisms of bacterial growth inhibition during plant immunity; results have broad basic and practical implications for future study of plant diseases.

2018-02-27 | GSE103441 | GEO

In planta bacterial RNA-Seq without bacterial isolation

2018-02-27 | GSE103406 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data