Genomics

Dataset Information

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Leiden Longevity Study Data Access Committee

ABSTRACT: Data Access Committee EGAC00001000210

PROVIDER: EGAC00001000210 | EGA |

REPOSITORIES: EGA

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Publications

Mobster: accurate detection of mobile element insertions in next generation sequencing data.

Thung Djie Tjwan DT   de Ligt Joep J   Vissers Lisenka E M LE   Steehouwer Marloes M   Kroon Mark M   de Vries Petra P   Slagboom Eline P EP   Ye Kai K   Veltman Joris A JA   Hehir-Kwa Jayne Y JY  

Genome biology 20140101 10

Mobile elements are major drivers in changing genomic architecture and can cause disease. The detection of mobile elements is hindered due to the low mappability of their highly repetitive sequences. We have developed an algorithm, called Mobster, to detect non-reference mobile element insertions in next generation sequencing data from both whole genome and whole exome studies. Mobster uses discordant read pairs and clipped reads in combination with consensus sequences of known active mobile ele  ...[more]

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