Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

EGAS00001000170-sc-20120119 - samples

ABSTRACT: 20 Matched Pair Breast Cancer Genomes

PROVIDER: EGAD00001000082 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

EGAS00001000160-sc-20120314 - samples

Project description:Matched Pair Cancer Cell line Whole Genomes

| EGAD00001000145 | EGA

RNA profiling of matched pair samples of primary breast cancer vs. lung and pleura metastasis

Project description:RNA profiling of matched pair samples of primary breast cancer vs. lung and pleura metastasis

| PRJNA608129 | ENA

RNA-seq data of canine mammary tumors and normal samples

Project description:Canine mammary gland tumors (CMTs) have been suggested as promising cancer models to human breast cancer due to their many biological and clinical similarities. Here, we collected 222 samples consist of 158 tumor samples and 64 matched normal samples of CMTs. Fresh tissue samples were transferred in to RNAlater, and refrigerated overnight at 4°C and then stored at -80°C. Total RNA was extracted from tissues using RNeasy mini kit. We aligned RNA-Seq raw data from 222 samples to canine reference genome CanFam3.1 using Tophat. We assembled transcript and calculated FPKM values using Cufflinks. All tumor samples were evaluated by histopathological characteristics including histopathological subtype, grade, and lymphatic invasion, and annotated with corresponding sequencing data. The histopathological classification and the histological grading system of CMTs were adopted from those of human breast cancer. In addition, immunohistochemical evaluation was performed in samples for estrogen receptor (ER) and human epidermal growth factor receptor 2 (HER2) status. DISCLAIMER: Using this dataset became freely available on Jul 22, 2019. On the other hand, we are now preparing a key paper about comparative analysis of canine and human breast cancer based on this dataset. If you plan to submit a similar paper using this dataset before the main paper is published, please feel free to contact the submitter (swkim@yuhs.ac) to coordinate submission.

2019-07-22 | GSE119810 | GEO

Intrinsic subtype and gene expression changes between matched primary and metastatic samples of breast cancer patients

Project description:We compared expression of 105 breast cancer-related genes between matched primary and metastatic breast cancer

2017-01-08 | GSE92977 | GEO

Homo sapiens

Project description:Breast Cancer Dataset

| PRJNA92973 | ENA

Epigenome analysis of primary breast cancer tumors and different types of recurrences.

Project description:Genome wide DNA methylation profiling of primary breast cancer tumors and their axillary metastasis and/or ipsilateral breast recurrence and/or contralateral breast recurrence. The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs. Samples included 20 primary breast tumors and their matched axillary metastasis, 17 primary breast tumors and their matched ipsilateral breast recurrence, and 11 primary breast tumors and their matched contralateral breast recurrence.

2013-12-24 | GSE44870 | GEO

Homo sapiens

Project description:HDMTX-20 pair

| PRJNA84605 | ENA

Circulating miRNAs as biomarkers and potential functional mediators of early stage breast cancer

Project description:Analysis of the levels of circulating miRNAs from women with early stage breast cancer and matched healthy controls. miRNAs in plasma samples from 20 women with early stage breast cancer (10 Caucasian American and 10 African American) compared with 20 matched healthy controls (10 Caucasian American and 10 African American).

2011-01-16 | E-GEOD-22981 | biostudies-arrayexpress

Homo sapiens

Project description:IRCC Breast Cancer dataset

| PRJNA186824 | ENA

EGAS00001000002-sc-20120119 - samples

Project description:Breast Cancer Follow Up Series

| EGAD00001000066 | EGA