Dataset Information
Ena-DATASET-Genentech-18-02-2016-19:31:54:532-12 - samples
Ontology highlight
ABSTRACT:
PROVIDER: EGAD00001001922 | EGA |
REPOSITORIES: EGA
Publications
Prediction and Quantification of Splice Events from RNA-Seq Data.
PloS one 20160524 5
Analysis of splice variants from short read RNA-seq data remains a challenging problem. Here we present a novel method for the genome-guided prediction and quantification of splice events from RNA-seq data, which enables the analysis of unannotated and complex splice events. Splice junctions and exons are predicted from reads mapped to a reference genome and are assembled into a genome-wide splice graph. Splice events are identified recursively from the graph and are quantified locally based on ...[more]
