'CRL Mon Mar 13 12:03:29 AEST 2017' - samples
Ontology highlight
ABSTRACT:
PROVIDER: EGAD00001003222 | EGA |
REPOSITORIES: EGA
Similar Datasets
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Project description:Four sorted human thymic subpopulations (CD34+1a-7+, CD34+1a+, EC, LC) from two donors were used for ATAC-Seq. Samples were sequenced in house in single-end 75nt mode using the NextSeq® 500/550 (Illumina) according to manufacturer’s instructions. Reads were trimmed with sickle and aligned with bowtie2 using default settings. Aligned reads from tCD34+1a-7+ and tCD34+1a+ populations from the two donors were merged to generate the tCD34 ATAC sample.
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Project description:We report the application of ChIP bisulfite sequencing (ChIPbisSeq) to establish the methylation state of DNA bound to RNApol2 phosphorylated in Ser5 (RNAPol2Ser5) in the mouse cortex. We first profiled the RNAPol2Ser5 binding using regular ChIPSeq from 45 million raw read pairs (31 million unique pairs were aligned to the genome). Then we used bisulfite converted DNA immunoprecipitated with an antibody against RNAPol2Ser5 (87 million raw read pairs, 38 million unique read pairs aligned to the genome) to map RNAPol2Ser5 sites and to establish the methylation state at these sites.
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Project description:Investigations of the quasi-ternary system Na(3)PO(4)-Mg(3)(PO(4))(2)-NdPO(4) allowed us to obtain the new phosphate hepta-sodium trideca-magnesium neodymium dodeca-kis-phosphate, Na(7)Mg(13)Nd(PO(4))(12), by applying a flux method. The crystal structure is isotypic with that of the previously reported Na(7)Mg(13)Ln(PO(4))(12) (Ln = Eu, La) compounds. It consists of a complex three-dimensional framework built up from an NdO(8) polyhedron (m symmetry), an MO(6) octa-hedron statistically occupied by M = Mg and Na, and eight MgO(x) (x = 5, 6) polyhedra (four with site symmetry m), linked either directely by sharing corners, edges and faces, or by one of the eight unique PO(4) tetra-hedra through common corners. Two of the PO(4) tetra-hedra are statisticaly disordered over a mirror plane. The whole structure can be described as resutling from an assembly of two types of structural units, viz [Mg(4)MP(4)O(22)](∞) (2) layers extending parallel to (100) and stacked along [100], and [Mg(4)NdP(4)O(36)](∞) (1) undulating chains running along the [010] direction. The six different Na(+) cations (five with site symmetry m and one with 0.5 occupancy) are situated in six distinct cavities delimited by the framework. The structure was refined from data of a racemic twin.
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