Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ena-DATASET-DEEP-24-03-2017-15:37:14:804-217 - samples

ABSTRACT: Regions of common inter-individual DNA methylation differences in human monocytes – potential function and genetic basis WGBS Data of Samples: 43_Hm03_BlMo_Ct, 43_Hm02_BlMo_Ct, 43_Hm05_BlMo_Ct, 43_Hm01_BlMo_Ct For details about sequencing or sample metadata check http://deep.dkfz.de/

PROVIDER: EGAD00001003259 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

All available datasets of DEEP

Project description:All available datasets of DEEP. There are several Reference Epigenomes available. For metadata check out www.deep.dkfz.de One reference epigenome represents a set of 6 ChIP-Seqs, WGBS, RNA-Seq, smallRNA-Seq and sometimes DNase1 and/or NOME-Seq.

| EGAS00001001608 | EGA

DEEP IHEC release 2017

Project description:Raw data files for DEEP's IHEC/EpiRR submission of 2017. metadata available at: http://deep.dkfz.de/#/experiments

| EGAS00001002655 | EGA

ena-DATASET-DEEP-21-02-2018-16:28:28:362-38 - samples

Project description:Raw data files for the German Epigenome Project (DEEP), IHEC/EpiRR submission of 2017. metadata available at: http://deep.dkfz.de/#/experiments

| EGAD00001003974 | EGA

ena-DATASET-DEEP-11-10-2016-14:17:29:345-92 - samples

Project description:mRNA, total RNA, small noncoding RNA, NOMe-Seq and DNase-Seq data from following samples (not every Sequencing Type for every sample): 01_HepG2_LiHG_Ct1 41_Hf01_LiHe_Ct 41_Hf02_LiHe_Ct 41_Hf03_LiHe_Ct 51_Hf03_BlCM_Ct 51_Hf04_BlCM_Ct 51_Hf03_BlEM_Ct 51_Hf04_BlEM_Ct 51_Hf03_BlTN_Ct 51_Hf04_BlTN_Ct Metadata available at deep.dkfz.de

| EGAD00001002735 | EGA

Correction of a Genetic Disease by CRISPR-Cas9-Mediated Gene Editing in Mouse Spermatogonial Stem Cells

Project description:We used CRISPR/Cas9 mediated gene editing technology to rescue a mutant gene in mouse spermatogenic stem cell(SSC). To evaluate the whole gemome off-target ratio and check the impact on imprinting methylation level by this gene editing method, We built libraries of WGBS from both mutant SSCs and rescued SSCs. We analyzed these data using bioinformatics .All the 12 imprinting locus the WGBS data coverd showed no difference between the two samples(sample name WGBS_**), with expected methylation patterns at each locus.

2014-12-31 | GSE60485 | GEO

Transcription profiling of human CD14+ monocytes after treatment with LL-37

Project description:Human PBMC were treated with LL-37 (20 ug/ml) for 4 hr. CD14+ monocytes were isolated from the PBMC population, followed by RNA isolation from the monocytes for hybridization with cDNA arrays.

2009-04-20 | E-FPMI-11 | biostudies-arrayexpress

ena-DATASET-BLUEPRINT-10-10-2013-10:34:13:986-486 - samples

Project description:WGBS-seq for monocytes and neutrophils

| EGAD00001000673 | EGA

IHEC DEEP Release August 2016

Project description:Additional sequencing data for the German IHEC contribution (DEEP, http://deep.dkfz.de/, http://www.deutsches-epigenom-programm.de/). This is the additional data released in August 2016. Contains datatypes: - Whole Genome Bisulfite sequencing - ChipSeq (H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me3, H3K9me3, Input) - tRNA – not unmapped - mRNA - snRNA - Dnase Hypersensitive sites - RRBS - NOMe

| EGAS00001001937 | EGA

ena-DATASET-DEEP-08-06-2015-12:48:05:403-429 - samples

Project description:Human monocytes from a healthy male blood donor were obtained after written informed consent and anonymised. Library preparation was performed essentially as described in the “Whole‐genome Bisulfite Sequencing for Methylation Analysis (WGBS)” protocol as released by Illumina. The library was sequenced on an Illumina HiSeq2500 using 101 bp paired-end sequencing. Read mapping was done with BWA.

| EGAD00001001390 | EGA

ena-DATASET-SC-01-06-2015-15:56:18:840-199 - samples

Project description:Whole-genome bisulfite sequencing (WGBS) on 30 breast cancer cases from the BASIS project.

| EGAD00001001388 | EGA