Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CPCG-mito variant calls - samples

ABSTRACT: VCF files containing mitochondrial variant calls using MToolbox

PROVIDER: EGAD00001003361 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

Axiom Genome-Wide Chicken Array of Broiler Chickens

Project description:DNA was isolated from whole red blood cells from various lines and crosses of broiler chickens. DNA was genotyped using Axiom genome-wide chicken array and cel files were analyzed using Axiom Analysis Suite Software (version 3.0.1) with Gallus gallus 5.0 using the software's Best Practices for agricultural animals. The results were exported (Genotyping_Data-3-21-2018.vcf) for all genotype calls and text file of all SNPs with >= 97% call rate rate was also produced for filtering the VCF file (ALL_SNPSs_with_Call_Rate_97_Plus_3-21-2018).

2019-05-25 | GSE131764 | GEO

CPCG-mito alignments - samples

Project description:Bam files containing mitochondrial alignments, extracted from CPCGene Whole Genome Alignments

| EGAD00001003360 | EGA

SNP analysis Rlv3841 ptsP suppressors

Project description:vcf files of ptsP suppressors

| PRJEB105238 | ENA

hMPXV Filtered Variant Calls (VEO Taskforce)

Project description:Filtered variant calls of public MPXV reads

| PRJEB55823 | ENA

Project description:VCF files for 300 Hu sheep genomes

| PRJEB94328 | ENA

SARS-CoV-2 Filtered Variant Calls (COVID-19 Taskforce VEO)

Project description:Filtered variant calls of public SARS-CoV-2 reads

| PRJEB45554 | ENA

BRCA_SV - samples

Project description:structural variant calls from Delly, vcf format

| EGAD00001003754 | EGA

GATCI_WXS_germline - samples

Project description:Exome sequences were aligned to the GRCH38 reference genome. Aligned sequence was analyzed with GATK Haplotype Caller to generate germline variant calls. Variant calls are in VCF format. Details for the call can be found in the VCF header

| EGAD00001005916 | EGA

GATCI_WXS_somaticsniper - samples

Project description:Exome sequences were aligned to the GRCH38 reference genome. Aligned sequence was analyzed with GATK/SomaticSniper, to generate somatic variant calls. Somatic variant calls are in VCF format. Details for the mutect call can be found in the vcf header.

| EGAD00001005918 | EGA

GATCI_WXS_mutect - samples

Project description:Exome sequences were aligned to the GRCH38 reference genome. Aligned sequence was analyzed with GATK/MuTect, to generate somatic variant calls. Somatic variant calls are in VCF format. Details for the mutect call can be found in the vcf header.

| EGAD00001005917 | EGA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data