Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ena-DATASET-DKFZ-10-07-2017-14:56:28:042-20 - samples

ABSTRACT: Fourteen files of patients 1, 2, 4, 6, 7, 8, 9, 12, 14, 16, 17, 18, 19 and 27 with WGS done on Illumina MiSeq with low coverage. For research purpose and authorised user only.

PROVIDER: EGAD00001003437 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

ena-DATASET-DKFZ-10-07-2017-14:51:26:287-19 - samples

Project description:Seven files of patients 3, 21, 29, 30, 31, 32 and 33 with WGS done on Illumina MiSeq with high coverage. For research purpose and authorised user only.

| EGAD00001003436 | EGA

ena-DATASET-DKFZ-10-07-2017-15:06:02:958-23 - samples

Project description:One file of patient 16 with WGS done on Illumina HiSeq X-Ten. For research purpose and authorised user only.

| EGAD00001003440 | EGA

ena-DATASET-DKFZ-06-07-2017-16:10:50:154-493 - samples

Project description:RNA analysis of two patients 11 and 15 with WGS done on Illumina HiSeq2000. For research purpose and authorised user only.

| EGAD00001003429 | EGA

ena-DATASET-DKFZ-10-07-2017-15:00:31:755-21 - samples

Project description:Three files of patients 20, 23 and 25 with WGS done on Illumina HiSeq 2000. For research purpose and authorised user only.

| EGAD00001003438 | EGA

ena-DATASET-DKFZ-10-07-2017-15:01:36:723-22 - samples

Project description:Three files of patients 10, 11 and 13 with WGS done on Illumina HiSeq X Ten. For research purpose and authorised user only.

| EGAD00001003439 | EGA

ena-DATASET-DKFZ-06-07-2017-17:03:52:162-505 - samples

Project description:RNA analysis of six patients 34, 35, 36, 37, 38 and 39 with WGS done on Illumina HiSeq2500. For research purpose and authorised user only.

| EGAD00001003430 | EGA

Array CGH analysis of 56 primary gastric cancers for elucidating prognostic biomarkers

Project description:Array CGH analysis was done with 56 primary gastric cancers to elucidate prognostic biomarkers on the BAC basis.

2010-08-10 | GSE15436 | GEO

Array CGH analysis of 56 primary gastric cancers for elucidating prognostic biomarkers

Project description:Array CGH analysis was done with 56 primary gastric cancers to elucidate prognostic biomarkers on the BAC basis. Using the extracted genomic DNA from 56 primary gastric cancers, array CGH was done to elucidate the prognostic biomarkers.

2010-08-10 | E-GEOD-15436 | biostudies-arrayexpress

chemical-recovery-floor-plexiglass-07-28-2020

Project description:chemical recovery date is 07 28 2020, done by zongyuan Liu

2020-08-26 | MSV000086022 | MassIVE

Targeted NGS on artificial microRNAs expressed by a pool of heterogeneous Sindbis viruses

Project description:Purpose: Next-generation sequencing (NGS) on targeted locus in Sindbis genome to determine frequency changes of artificial microRNAs expressed by viruses after passaging in cancer and normal cells Methods: RNA was harvested in Trizol 488 (Thermo Fisher). RNA was extracted using the manufacturer’s protocol and quantified by nanodrop. Sequencing was done by SeqMatic on a MiSeq v3 platform generating 75bp reads. Adapters were trimmed using Trimmomatic and adapter-free reads represent artificial microRNAs encoded by Sindbis virus in a sample. Results: We have identified changes in artificial microRNA frequency after passaging virus pool in cancer and normal cells and have identified microRNAs increasing viral fitness in cancer cells. Conclusions: Our study represents artificial microRNAs which target pathways that can aid oncolytic viral replication in cancer cells.

2022-03-02 | GSE197271 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data