Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

9c8d3e08-0681-4589-ac94-39303c65fc8f - samples

ABSTRACT: VCF file with genome-wide data for 62 Iberian Roma samples.

PROVIDER: EGAD00001006358 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

Axiom Genome-Wide Chicken Array of Broiler Chickens

Project description:DNA was isolated from whole red blood cells from various lines and crosses of broiler chickens. DNA was genotyped using Axiom genome-wide chicken array and cel files were analyzed using Axiom Analysis Suite Software (version 3.0.1) with Gallus gallus 5.0 using the software's Best Practices for agricultural animals. The results were exported (Genotyping_Data-3-21-2018.vcf) for all genotype calls and text file of all SNPs with >= 97% call rate rate was also produced for filtering the VCF file (ALL_SNPSs_with_Call_Rate_97_Plus_3-21-2018).

2019-05-25 | GSE131764 | GEO

99ad441d-b772-4f5e-8f85-448b4015e1a8 - samples

Project description:This dataset includes genome-wide autosomal array data for 11 Iberian Roma individuals used in the Merchero project.

| EGAD00001007773 | EGA

Whole Exome Sequences from Iberian Roma samples

Project description:Study of high-depth Roma whole exomes to analyse the impact of complex demography on the functional genomic variation. This study also includes genome-wide array data of Iberian Roma individuals

| EGAS00001004599 | EGA

Phaseolus lunatus - Peru

Project description:File content a .vcf of 48 samples of Phaseolus lunatus

| PRJEB104516 | ENA

Gene expression profiling of archival tongue carcinoma and normal tongue tissue (all samples)

Project description:RNA extracted from 78 FFPE tongue samples, 62 tongue carcinomas and 16 non-malignant controls, were succesfully analysed using the whole genome DASL array to obtain gene expression profiles. Gene expression profiles were used to identify differentially expressed genes with the ultimate goal of finding out their importance for tongue cancer development and maintenance. Sample were formalin fixed paraffin embedded biopsies taken for diagnostic purposes and had been stored between 1 and 13 years. Because of the general poor quality of RNA from archival samples a special focus were put on its effect on the detected expression levels. 28 tumours and 16 controls with a CTdiff< 5 were selected for differential gene expression analysis. Data for only these sample were normalized again and can be found in seperate data file.

2012-05-11 | GSE34105 | GEO

ddfe1ee9-23b6-44bc-a3eb-4bfdc096499f - samples

Project description:Dataset with 81 whole exome sequences from Iberian Roma samples.

| EGAD00001006357 | EGA

Iberian and Eurasian lynx 6x samples

Project description:Iberian and Eurasian lynx 6x samples

| PRJEB44874 | ENA

3068fd16-1930-447e-b2cd-0791795611c6 - samples

Project description:Paired end FASTQ files of 119 Iberian Roma whole exome sequence data (Illumina sequencing)

| EGAD00001009722 | EGA

c48d2d0c-f535-43a5-a528-6326f8b27c00 - samples

Project description:Pair end fastq file of 40 Roma whole genome sequence data. This dataset contains the fastq files obtained using illumina hiseq X generated reads, ~30X coverage. 10 Makedonian Roma - Balkan Roma 10 Spanish Roma - North/Western Roma 10 Hungarian Roma - Vlax and Romungro Roma 5 Lithuanian Roma - North/Western Roma 5 Ukranian Roma - Romungro Roma.

| EGAD00001006024 | EGA

Epigenome wide association study of post-mortem Alzheimer’s Disease samples

Project description:Samples from 72 AD patients and 62 age-matched cognitively normal controls were assayed using Illumina© Infinium MethylationEPIC BeadChip. We performed an epigenome-wide association study (EWAS) to evaluate the epigenetic differences using post-mortem superior temporal gyrus (STG) and inferior frontal gyrus (IFG) samples. We performed an epigenome-wide association study (EWAS) to evaluate the epigenetic differences using post-mortem superior temporal gyrus (STG) and inferior frontal gyrus (IFG) samples.

2020-10-20 | GSE156984 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data