Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

6c700700-d045-40c6-a4f8-b877fa8b0ad5 - samples

ABSTRACT: RNA-Seq data on multiple myeloma CD138positive bone marrow plasma cells, 11 samples, sequenced on HiSeq 4000 and HiSeq X-Ten, using mostly the TruSeq stranded mRNA Kit.

PROVIDER: EGAD00001008619 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

443d639b-9c49-4ff6-bea2-5b7336714a90 - samples

Project description:Whole genome, exome and RNA sequencing of TFCP2-rearranged rhabdomyosarcoma, 86 samples of paired fastq files, sequenced on: Illumina HiSeq 2500 using Agilent SureSelect WGS, Illumina HiSeq 2500 using Illumina TruSeq RNA, Illumina HiSeq 2500 using Agilent SureSelect v5 WES (+UTRs), Illumina HiSeq 4000 using Agilent SureSelect WGS, Illumina HiSeq 4000 using Illumina TruSeq stranded mRNA Kit, Illumina HiSeq 4000 using Agilent SureSelect v5 WES stranded mRNA Kit, Illumina NovaSeq 6000 using Illumina TruSeq Stranded mRNA, Illumina NovaSeq 6000 using Illumina TruSeq Nano DNA, Illumina HiSeq X Ten using TruSeq Nano DNA.

| EGAD00001010108 | EGA

RNA-seq from knee and hip osteoarthritis cartilage

Project description:In total, 70 samples on macroscopically preserved and lesioned OA cartilage from the same patient was taken for RNA-seq. Subsequently, paired-end 2×100 bp RNA library sequencing (Illumina TruSeq RNA Library Prep Kit, Illumina HiSeq 2000 and TruSeq Stranded Total RNA LT Sample Prep Kit, Illumina HiSeq 4000) was performed.

2019-01-07 | E-MTAB-7313 | biostudies-arrayexpress

Prostaglandin E2 inhibits pro-fibrotic function of human pulmonary fibroblasts by disrupting Ca2+-signaling

Project description:Purpose: Identification of gene expression in human lung fibroblasts, including analysis of impact of IPF (Idiopathic Pulmonary Fibrosis) as well as TGFβ stimulation, with particular emphasis on prostanoid receptors and related pathways. Methods: Truseq stranded mRNA sequencing, via Illumina Hiseq 4000. Single reads, 75bp, ~25 million reads per sample. Quantification of gene expression in TPM using Kallisto, followed by Tximport. mRNA isolated via Qiagen RNeasy kit, with on-column DNase1 digestion. Results: Quantification of gene expression in primary human lung fibroblasts, including quantification of prostanoid GPCRs.

2019-03-01 | GSE119007 | GEO

RNA-Seq of SOX4 and HOXD3 CRISPR KO SupT1 cells against wildtype SupT1 cells during HIV-1 infection

Project description:poly-A enrichment RNASeq on RNA samples isolated from SupT1 cells with lentiviral mediated CRISPR SOX4 and HOXD3 KO against wildtype SupT1 during the time course of HIV infection (uninfected, 8, 18, 30 and 42hpi). SupT1 cells were spinofected with NLENG1-IRES G1I molecular HIV-1 clone. After RNA isolation, libraries were prepared with Ilumina TruSeq Stranded mRNA LT-Kit and sequenced on a llumina HiSeq 3000/4000 instrument.

2022-11-01 | E-MTAB-8444 | biostudies-arrayexpress

ab02c3c0-24a7-4ba5-87a8-8d9ef0583e7a - samples

Project description:Paired RNA sequencing of 30 samples RRMM using Illumina TruSeq stranded mRNA kit and either HiSeq2000 or HiSeq X Ten for sequencing.

| EGAD00001009680 | EGA

RNA-seq profiling of trastuzumab or lapatinib sensitive and resistant SKBR3 breast cancer cells

Project description:RNAseq was done using Library protocol =Illumina TruSeq Stranded mRNA Library Preparation Kit with poly(A) selection , HiSeq 101 Cycle Paired-End Sequencing v4

2018-11-30 | GSE114575 | GEO

RNA-seq of control and Lmna -/- mice heart samples

Project description:RNA-sequencing analysis from whole heart ribosome depleted RNA from the 2-week old WT and Lmna-/- mice (N=5) . Strand specific RNA seq libraries where prepared form ribosome-depleted cardiac RNA samples using the Illumina TruSeq stranded total RNA library preparation kit. The samples weresequenced on the Illumina HiSeq 4000 instrument using the paired-end sequencing reagents to generate100 base paired end reads.

2019-02-08 | GSE110341 | GEO

673a8299-ddba-4f2e-b791-79a05947b5a9 - samples

Project description:RNA sequencing of 19 samples from PCNSL tumors. Sequencing was performed on a HiSeq X Ten using Illumina TruSeq Stranded mRNA Kit. Sequencing was always paired.

| EGAD00001011119 | EGA

edd2e08f-3760-44a7-8559-95963d261a25 - samples

Project description:Paired RNA sequencing data (21 runs/ 17 samples) of different tumors. The samples were prepared using the Illumina TruSeq stranded mRNA Kit. The sequencing was done on Illumina HiSeq 4000.

| EGAD00001009706 | EGA

Analysis of Transcriptome in small intestine after radiation injury with treatment of pravastatin

Project description:This study is designed to understand whether Pravastatin (Pra) treatment alters the transcriptome of small intestine after radiation injury. RNA was extracted from 15 Gy abdominal irradiated Gottingen minipigs with PS treatment. A cDNA library was generated using a TruSeq Stranded mRNA sample prep kit (Illumina, San Diego, CA), and transcriptome sequencing was performed using a TruSeq 3000/4000 SBS kit and Illumina sequencer with 101 bp paired-end reads per sample (Macrogen, Seoul, Korea).

2021-08-29 | GSE182829 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data