Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SHAH_H000209_N01_02_WG01_DATASET - samples

ABSTRACT: Whole genome sequencing of normal sample for triple negative breast cancer patient SA1035

PROVIDER: EGAD00001009216 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

SHAH_H000209_T18_02_WG01_DATASET - samples

Project description:Whole genome sequencing of tumour sample for triple negative breast cancer patient SA1035

| EGAD00001009258 | EGA

SIPA1 expression in breast cancer patient

Project description:To study the expression of SIPA1 in patients with metastatic triple-negative breast cancer, we obtained a subcutaneous metastatic sample from a patient with stage III triple-negative breast cancer and performed single-cell transcriptome sequencing

2022-12-31 | GSE221731 | GEO

Gene expression profiling of triple negative breast cancer, normal ductal cells, and normal tissues

Project description:To identify novel molecular targets for triple negative breast cancer (TNBC), we have employed whole genome microarray expression profiling. We purified 30 surgically resected breast cancer tissue diagnosed triple negative by means of immunohistochemical staining and 13 normal mammary ductal cells with lasermicrobeam microdissection system (PALM MicroBeam, Carl Zeiss MicroImaging Co., Ltd), performed whole human genome microarray, and compared gene expression levels of TNBC, normal mammary ductal cells, and normal vital organs to develop molecular targets with a minimum risk.

2012-12-21 | GSE38959 | GEO

Identification of Prognostic Genes for Recurrent Risk Prediction in Triple Negative Breast Cancer Patients in Taiwan

Project description:Discrepancies in the prognosis of triple negative breast cancer exist between Caucasian and Asian populations. Yet, the gene signature of triple negative breast cancer specifically for Asians has not become available. Therefore, the purpose of this study is to construct a prediction model for recurrence of triple negative breast cancer in Taiwanese patients. Whole genome expression profiling of breast cancers from 185 patients in Taiwan from 1995 to 2008 was performed, and the results were compared to the previously published literature to detect differences between Asian and Western patients. Pathway analysis and Cox proportional hazard models were applied to construct a prediction model for the recurrence of triple negative breast cancer. Most expression data of samples (181/185) were reanalyzed from previous studies already uploaded to GEO (see "reanalysis of" links below). Four additional gene expression profiling data of triple negative breast cancer sample were added to this study.

2012-02-02 | E-GEOD-33095 | biostudies-arrayexpress

Identification of significant gene regulations for breast cancer from human tissues

Project description:To discover individual genes with potential diagnostic and therapeutic utilities, we use gene expression profiling from real patient tissues to identify significantly regulated genes out of a broad coverage of human transcriptome. We use Agilent gene expression microarray technologies to measure gene expressions of 32 cancerous and normal tissues from breast cancer patients. Total RNAs were extracted and analyzed using Agilent microarray technologies. The whole genome expression profiling has been proformed and several significantly differently expressed genes (such as HS3ST4, MMP1, MMP11) were quatified by qPCR to verify their up/down-regulations, leading to discovery of important genes related to breast cancer metastasis. We examined 32 human breast tissues of three different breast cancer subtypes (including Luminal A, Luminal B, Triple Negative) and normal controls to perform microarray gene expression profiling.

2014-05-08 | E-GEOD-57297 | biostudies-arrayexpress

SHAH_H000579_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA592

| EGAD00001009242 | EGA

SHAH_H000587_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA654

| EGAD00001009250 | EGA

SHAH_H000586_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA601

| EGAD00001009249 | EGA

SHAH_H000585_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA600

| EGAD00001009248 | EGA

SHAH_H000665_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA1065

| EGAD00001009592 | EGA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data