Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Matched Pair Cell Line Tumour RNAseq

ABSTRACT: In this study we will sequence the transcriptome of Verified Matched Pair Cancer Cell line tumour samples. This will be married up to whole exome and whole genome sequencing data to establish a full catalog of the variations and mutations found.

PROVIDER: EGAS00001000434 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

Matched Pair Cell Line Tumour RNAseq

Project description:In this study we will sequence the transcriptome of Verified Matched Pair Cancer Cell line tumour samples. This will be married up to whole exome and whole genome sequencing data to establish a full catalog of the variations and mutations found.

2013-07-11 | E-ERAD-157 | biostudies-arrayexpress

EGAS00001000434-sc-20130710 - samples

| EGAD00001000630 | EGA

Transcriptome Sequencing of Cancer Cell Lines

Project description:In this study we will sequence the transcriptome of Verified Cancer Cell lines. This will be married up to whole exome and whole genome sequencing data to establish a full catalog of the variations and mutations found.

2016-05-18 | E-ERAD-64 | biostudies-arrayexpress

EGAS00001000261-sc-20130313 - samples

| EGAD00001000359 | EGA

Transcriptome Sequencing of Cancer Cell Lines

| EGAS00001000261 | EGA

Matched Pair Cancer Cell line Whole Genomes

Project description:We propose to definitively characterise the somatic genetics of 29 matched pair cell lines through generation of comprehensive catalogues of somatic mutations by high coverage genome sequencing.

| EGAS00001000160 | EGA

Breast Cancer Matched Pair Cell Line Whole Genomes

Project description:We propose to definitively characterise the somatic genetics of matched pair breast cancer cell lines through generation of comprehensive catalogues of somatic mutations by high coverage genome sequencing coupled with integrated transcriptomic and methylation analyses.

| EGAS00001000166 | EGA

Auanema freiburgensis (APS7) mate-pair and pair-end sequences

Project description:Mate-pair and pair-end sequences used to assemble Auanema freiburgensis (APS7) genome

| PRJEB61637 | ENA

Mesenchymal (MES)- and Adrenergic (ADN) neuroblastoma cell line pair of isogenic origin

Project description:Cell line pair with different phenotypes were isolated from 1 patient to study intra-tumor heterogeneity in neuroblastoma

2021-10-01 | GSE125057 | GEO

Epigenome characterization at single base-pair resolution

Project description:We have combined standard micrococcal (MNase) digestion of nuclei with a modified protocol for construction paired-end DNA sequencing libraries to map both nucleosomes and subnucleosome-sized particles at single base-pair resolution throughout the budding yeast genome. We found that partially unwrapped nucleosomes and subnucleosome-sized particles can occupy the same position within a cell population, suggesting dynamic behavior. By varying the time of MNase digestion, we have been able to observe changes that reflect differential sensitivity of particles, including eviction of nucleosomes. Our protocol and mapping method provide a general strategy for characterizing full epigenomes. We used micrococcal nuclease mapping, chromatin immunoprecipitation and paired-end sequencing to determine the structure of yeast centromeres at single base-pair resolution.

2011-10-26 | E-GEOD-30551 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data