Genomics

Dataset Information

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Whole genome bisufite sequencing of smoking and non-smoking mother-child pairsBisufite sequencing, RNA-seq and ChIP-Seq data of whole blood samples from smoking and non-smoking mothers and their children at gestation/birth and follow-up years.


ABSTRACT: Whole-blood samples of 16 mother-child pairs with differing maternal smoking behaviour were bisulfite treated and sequenced with deep coverage to identify smoking-associated differentially methylated regions. RNA-sequencing and ChIP-sequencing of 4 chromatin marks complete the data set and allow for integrative analyses, functional region annotation and to study the impact of epigenetic changes on gene expression. Longitudinal data spanning several years provides the means to investigate the stability of observed differences of all data types.

PROVIDER: EGAS00001000455 | EGA |

REPOSITORIES: EGA

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Publications

Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children.

Bauer Tobias T   Trump Saskia S   Ishaque Naveed N   Thürmann Loreen L   Gu Lei L   Bauer Mario M   Bieg Matthias M   Gu Zuguang Z   Weichenhan Dieter D   Mallm Jan-Philipp JP   Röder Stefan S   Herberth Gunda G   Takada Eiko E   Mücke Oliver O   Winter Marcus M   Junge Kristin M KM   Grützmann Konrad K   Rolle-Kampczyk Ulrike U   Wang Qi Q   Lawerenz Christian C   Borte Michael M   Polte Tobias T   Schlesner Matthias M   Schanne Michaela M   Wiemann Stefan S   Geörg Christina C   Stunnenberg Hendrik G HG   Plass Christoph C   Rippe Karsten K   Mizuguchi Junichiro J   Herrmann Carl C   Eils Roland R   Lehmann Irina I  

Molecular systems biology 20160324 3


Epigenetic mechanisms have emerged as links between prenatal environmental exposure and disease risk later in life. Here, we studied epigenetic changes associated with maternal smoking at base pair resolution by mapping DNA methylation, histone modifications, and transcription in expectant mothers and their newborn children. We found extensive global differential methylation and carefully evaluated these changes to separate environment associated from genotype-related DNA methylation changes. Di  ...[more]

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