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TTV018 RORC IBD associated genotype effects on RORgT expression and function in ex vivo T cells

ABSTRACT: RNA sequencing of peripheral immune cells from patients +/- an IBD risk variant. Peripheral immune cells +/- in vitro test compound treatment. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

PROVIDER: EGAS00001001590 | EGA |

REPOSITORIES: EGA

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TTV018 RORC IBD associated genotype effects on RORgT expression and function in ex vivo T cells

Project description:RNA sequencing of peripheral immune cells from patients +/- an IBD risk variant. Peripheral immune cells +/- in vitro test compound treatment.This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2016-07-11 | E-ERAD-443 | biostudies-arrayexpress

Transcriptomic effects of rs4845604, an IBD and allergy-associated RORC variant, in stimulated ex vivo CD4+ T cells.

Project description: Not available

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EGAS00001001590-sc-20160629 - samples

Project description:RNA sequencing of peripheral immune cells from patients +/- an IBD risk variant. Peripheral immune cells +/- in vitro test compound treatment. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

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2015-07-21 | E-ERAD-78 | biostudies-arrayexpress

EGAS00001001590-sc-20190215 - samples

Project description:RNA sequencing of peripheral immune cells from patients +/- an IBD risk variant. Peripheral immune cells +/- in vitro test compound treatment. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ . This dataset contains all the data available for this study on 2019-02-15.

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Metabolic phenotyping of ex-vivo breast samples by DESI mass spectrometry imaging

Project description:This study involves the analysis of surgically resected samples from patients undergoing breast surgery. The samples published here have been used as part of the publication by [1], and all experimental details can be found within. Desorption electrospray ionisation mass spectrometry imaging (DESI MSI) was used to provide spatially resolved metabolic profiles across the various tissue samples, which in combination with histological assessment allows characterisation of changes across distinct tissue types. In being able to characterise the metabolic differences between tissue types, it becomes possible to predict future unknown samples using a data-driven histological approach to enhance current disease prognoses. </p> Ref:</br> [1] Guenther S, Muirhead LJ, Speller AV, Golf O, Strittmatter N, Ramakrishnan R, Goldin RD, Jones E, Veselkov K, Nicholson J, Darzi A, Takats Z. Spatially resolved metabolic phenotyping of breast cancer by desorption electrospray ionization mass spectrometry. Cancer Res. 2015 May 1;75(9):1828-37. doi:10.1158/0008-5472.CAN-14-2258. PMID:25691458

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Ex vivo model predicted in vivo efficacy of CFTR modulator therapy in a child with rare genotype.

Project description: Not available

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Project description:Clinical remission is apparent when laboratory markers of inflammation are normal and clinical symptoms are absent. However, sub-clinical inflammation can still be present. A detailed analysis of the immune status during this inactive state of disease may provide a useful tool to subcategorize patients with subclinical immune activation We performed (un)supervised clustering analysis of IBD-associated genes and applied IngenuityM-BM-. pathway software to identify specific molecular profiles between patients. We analyzed RNA gene expression profiles of peripheral blood leucocytes (PBL) from pediatric IBD patients in clinical remission and age-matched controls.

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IBD Whole Genome Sequencing

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