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Characterizing the tumor immune microenvironment of ependymomas using targeted gene expression profiles and RNA-sequencing the pros and cons

ABSTRACT: RNA sequencing data of a collection of 6 pediatric ependymoma cases

PROVIDER: EGAS00001006535 | EGA |

REPOSITORIES: EGA

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Characterizing the tumor immune microenvironment of ependymomas using targeted gene expression profiles and RNA sequencing

Project description:Defining the tumor immune microenvironment (TIME) of patients using transcriptome analysis is gaining more popularity. Here, we examined and discussed the pros and cons of using RNA -sequencing for Fresh Frozen (FF) samples and targeted gene expression immune profiles (NanoString) for Formalin-Fixed, Paraffin-Embedded (FFPE) samples to characterize the TIME of ependymoma samples.

2022-10-25 | GSE216478 | GEO