Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lung transplant survival in pulmonary fibrosis with telomere dysfunction

ABSTRACT: Lung transplant outcomes in pulmonary fibrosis with and without telomere dysfunction

INSTRUMENT(S): Illumina HiSeq 4000

ORGANISM(S): Homo Sapiens

SUBMITTER: ILD Unit Hospital Universitari de Bellvitge-IDIBELL-Universitat de Barcelona

PROVIDER: PRJEB46414 | EVA | 2021-07-22

REPOSITORIES: EVA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	AllPatients.ANNOVAR-snpEff-GATK-annotations.hg19.TRG.PASS.vcf.gz	Vcf
	AllPatients.ANNOVAR-snpEff-GATK-annotations.hg19.TRG.PASS.vcf.gz.csi	Vcf
	AllPatients.ANNOVAR-snpEff-GATK-annotations.hg19.TRG.PASS.vcf.gz.tbi	Vcf

Items per page:

1 - 3 of 3

Similar Datasets

Alteration of miRNA profiles between lung tumours from the KRASLSL-G12D/+ mice and the normal lung tissues

Project description:Small RNA deep sequencing to determine the alteration of miRNA profiles in the lung tumours from the KRASLSL-G12D/+ mice compared with the normal lung tissues from the mice without Adeno-Cre treatment.

2024-08-01 | GSE220471 | GEO

Whole blood microRNA expression in human lung cancer

Project description:Seventh generation Exiqon locked nucleic acid miRCURY LNA microarrays were used to profile the expression of microRNAs in whole blood of patients with lung cancer and of clinically relevant controls without the disease (individuals with non-cancerous lung nodule, at high risk for cancer because of heavy smoking, or with lung cancer treated by surgical resection). The goal was to examine if whole blood microRNAs can be used for developing a non-invasive assay to diagnose lung cancer.

2012-09-11 | GSE40738 | GEO

Transcription profiling of normal lung from 18 multi-organ donors to analyse variance of gene expression in lung

Project description:Peripheral sections of upper and lower lung from 18 human multi-organ donors without evidence of lung disease.

2007-10-02 | E-GEOD-1643 | biostudies-arrayexpress

Normal Variance of Gene Expression in the Human Lung

Project description:Peripheral sections of upper and lower lung from 18 human multi-organ donors without evidence of lung disease. Keywords = Lung Pulmonary Keywords: repeat sample

2004-11-15 | GSE1643 | GEO

Mus musculus strain:Lung | isolate:Lung | breed:Lung | cultivar:Lung

Project description:Mus musculus strain:Lung | isolate:Lung | breed:Lung | cultivar:Lung Raw sequence reads

| PRJNA1019227 | ENA

Microarray expression profile of long non-coding RNAs in human lung adenocarcinoma

Project description:To determine the lncRNA expression profile in Lung adenocarcinoma (LAD) with or without lymph node metastasis and matched non-tumor tissues, we uesed lncRNA microArray analysis form Arraystar to examine the expression of lncRNAs in LAD with or without lymph node metastasis and matched non-tumor tissues.

2020-12-21 | GSE115734 | GEO

RNA-seq transcriptional analysis of mouse lung tissue with and without Coccidioides immitis lung infection

Project description:RNA-seq transcriptional analysis of mouse lung tissue with and without Coccidioides immitis lung infection

| PRJNA611593 | ENA

miRNA Profiling from total blood of lung cancer and control samples

Project description:This project aims at the detection of specific patterns of miRNAs in peripheral blood samples of lung cancer patients. As controls, blood of donors without known affection have been tested. Using the miRNA patterns we hope to detect a diagnostic pattern for the non-invasive diagnosis of non-small cell lung carcinoma.

2009-09-24 | GSE17681 | GEO

Matched Lung Tumor And Emphysematous Matrix Proteomics, Transcriptomics, and Translatomics

Project description:Chronic obstructive pulmonary disease (COPD) is a known risk factor for developing lung cancer suggesting that the COPD stroma contains factors supporting tumorigenesis. Since cancer initiation is complex we used a multi-omic approach to identify gene expression patterns that distinguish COPD stroma in patients with or without lung cancer. Our overall objective is the identification of gene expression pathways and levels of regulation in lung stroma of patients with COPD that harbor lung cancer. We obtained lung tissue from patients with COPD and lung cancer (tumor and adjacent non-malignant tissue) and those with COPD without lung cancer for proteomic and mRNA (cytoplasmic and polyribosomal) profiling. We used the joint and individual variation explained (JIVE) method to integrate and analysis across the three datasets. JIVE identified eight latent patterns that robustly distinguished and separated the three groups of tissue samples. Predictive variables that associated with the tumor, compared to adjacent stroma, were mainly represented in the transcriptomic data, whereas, predictive variables associated with adjacent tissue compared to controls was represented at the translatomic level. Kyoto Encyclopedia of Genes and Genome (KEGG) pathway analysis revealed extracellular matrix (ECM) and PI3K-Akt signaling pathways as important signals in the pre-malignant stroma. COPD stroma adjacent to lung cancer is unique and differs from non-malignant COPD tissue and is distinguished by the extracellular matrix and PI3K-Akt signaling pathways.

2019-05-28 | PXD007919 | Pride

Expression data from lung tissues of minipig with left lung ischemia-reperfusion

Project description:Lung ischemia-reperfusion (I/R) injury remains one of the common complications after various cardiopulmonary surgeries. I-R injury represents one potentially maladaptive response of the innate immune system which is featured by an exacerbated sterile inflammatory response triggered by tissue damage. Thus, understanding the key components and processes involved in sterile inflammation during lung I-R injury is critical to alter care and extend survival for patients with acute lung injury. We constructed a minipig surgical model of transient unilateral left pulmonary artery occlusion without bronchial involvement to create ventilated lung I-R injury. Lung tissues from minipig with sham operation (one sample), left side lung tissues (the operated side)(one sample) and right side lung tissues (the non-operated side)(one sample) from minipig with lung ischemia-reperfusion were submitted for gene expression array analysis.

2015-12-07 | E-GEOD-75560 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data