Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SNP genotyping across 3 NM pod-type Pepper F2 populations for QTL analyses

ABSTRACT: SNP table from 3 NM pepper F2 populaitons used for QTL mapping

INSTRUMENT(S): Illumina HiSeq 4000

ORGANISM(S): Capsicum Annuum

SUBMITTER: Extension Plant Sciences, New Mexico State University; Seed Biotechnology Center, University of California Davis

PROVIDER: PRJEB70773 | EVA | 2023-12-03

REPOSITORIES: EVA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	chile_all_pops_minDP10.accessioned.vcf.gz	Vcf
	chile_all_pops_minDP10.accessioned.vcf.gz.csi	Vcf
	chile_all_pops_minDP10.vcf.csi	Other
	chile_all_pops_minDP10.vcf.gz	Vcf

Items per page:

1 - 4 of 4

Similar Datasets

SNP genotyping across 3 Pepper F2 populations for QTL analyses

Project description:SNP table generated from 3 F2 populaitons used for QTL mapping

2023-03-04 | PRJEB60339 | EVA

Transcription profiling of rat anterior pituitary gland using DES-treated COPxACI F2 rats - Expression QTL mapping.

Project description:Anterior pituitary glands were isolated from 21 week old male rats treated for 12 weeks with the synthetic estrogen diethylstilbestrol (DES). 43 COPxACI F2 animals were selected based on pituitary weight phenotypic extremes: 22 highest and 21 lowest pituitary weights in our F2 population. Expression profiles were determined using Affymetrix Rat Genome 230 v. 2.0 arrays. In conjunction with genomewide genotypes available for these 43 animals, linkage analysis was done using mRNA abundance of each transcript on the array as a separate quantitative phenotype. These arrays provide a resource for expression QTL (eQTL) mapping on a genomewide level in the pituitary gland. Experiment Overall Design: 43 samples from anterior pituitary gland were analyzed. COPxACI F2 male animals were treated with DES for 12 weeks, starting at 9 weeks of age. Pituitary glands were harvested and weighed at sacrifice (21 weeks of age). The 43 samples were selected for pituitary weight phenotypic extremes: 22 highest and 21 lowest pituitary weights in our F2 population. Genomewide genotypes are available for these animals and in conjunction with the array data, genomewide expression QTL (eQTL) mapping was done.

2008-06-12 | E-GEOD-4081 | biostudies-arrayexpress

Expression QTL (eQTL) mapping in the anterior pituitary gland using DES-treated COPxACI F2 rats.

2006-03-31 | GSE4081 | GEO

Expression QTL mapping of Toxoplasma gondii genes

Project description:This SuperSeries is composed of the following subset Series: GSE11437: Expression QTL mapping of Toxoplasma gondii genes, Bradyzoite array GSE11514: Expression QTL mapping of Toxoplasma gondii genes, Tachyzoite array Keywords: SuperSeries Refer to individual Series

2008-05-22 | E-GEOD-11515 | biostudies-arrayexpress

Transcriptome and QTL mapping analyses identifying major QTL genes controlling glucosinolates contents between vegetable-type and oilseed-type Brassica rapa plants

Project description:Transcriptome and QTL mapping analyses identifying major QTL genes controlling glucosinolates contents between vegetable-type and oilseed-type Brassica rapa plants

| PRJNA881745 | ENA

Mouse Diversity Array SNP Genotyping of B10.BALBChr16 and BALB.B10Chr16 Reciprocal Consomic Strain Mice

Project description:To identify novel mechanisms regulating allogeneic hematopoietic cell engraftment, we previously used a forward genetic approach and described identification, in mice, of the Bmgr5 bone marrow (BM) engraftment quantitative trait locus (QTL). This QTL confers dominant and large allele effects for engraftment susceptibility. It was localized to chromosome 16 by classical quantitative genetic techniques in a segregating backcross bred from susceptible BALB.K and resistant B10.BR mice. We now report verification of the Bmgr5 QTL using reciprocal chromosome 16 consomic strains. The BM engraftment phenotype in these consomic mice shows that Bmgr5 susceptibility alleles are not only sufficient but also indispensable for conferring permissiveness for allogeneic BM engraftment. Using panels of congenic mice, we resolved the Bmgr5 QTL into two separate subloci, termed Bmgr5a and Bmgr5b, each conferring permissiveness for the engraftment phenotype and both fine mapped to an interval amenable to positional cloning. Candidate Bmgr5 genes were then prioritized using whole exome DNA sequencing and microarray gene expression profiling. Further studies are needed to elucidate the genetic interaction between Bmgr5a and Bmgr5b and identify causative genes and underlying gene variants. This may lead to new approaches for overcoming the problem of graft rejection in clinical hematopoietic cell transplantation.

2013-01-10 | GSE43377 | GEO

Expression QTL mapping of chicken hypothalamus

Project description:Gene expression QTL mapping of 129 individual hypothalamus samples from a Red Junglefowl by White Leghorn advanced intercross

2015-11-29 | E-MTAB-3154 | biostudies-arrayexpress

Expression QTL mapping of chicken femoral bone

Project description:Expression quantitative trait locus (QTL) mapping of 127 adult femoral bone samples from a Red Junglefowl x White Leghorn advanced intercross line. Bone trait QTL have been mapped in the same cross, allowing a genetical genomics approach to quantitative trait gene identification

2015-10-31 | E-MTAB-3141 | biostudies-arrayexpress

Yeast Phospho QTL (resubmission)

Project description:Rachel Brem's QTL yeast strain collection (BY4716 x S288C cross) profiled by full lysate and phospho-enrichment proteomic analysis

2022-05-10 | PXD010893 | Pride

Grapevine anthocyanin QTL

Project description:Mapping major QTL for grapevine anthocyanin coloration in variety 'Chasselas violet'

| PRJEB106606 | ENA