Genomics

Dataset Information

3

Whole genome detection of sequences of six horses from diverse breeds.


ABSTRACT: Completed in 2009, the reference genome assembly of the domesticated horse (EquCab 2.0) produced the majority of publically available annotations of genetic variations in this species. Following that effort, a few other projects that focused at variant discovery of a particular breed or two. In this project we aim to identify and annotate single nucleotide polymorphisms (SNPs), insertions and deletions (INDELs), copy number variations (CNVs) and structural variations (SVs) in the genomes six horses of diverse genetic background using next generation sequencing. Analysis ERZ780739 uses EquCab 2.0 as the reference sequence, while analysis ERZ1195829 uses EquCab 3.0.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Equus caballus  

SUBMITTER: UNIVERSITY OF FLORIDA 

PROVIDER: PRJEB9799 | EVA | 2016-09-01

REPOSITORIES: EVA

Dataset's files

Source:
Action DRS
fixed2.accessioned.vcf.gz Vcf
fixed2.vcf.gz Vcf
fixed2.vcf.gz.tbi Vcf
updatedfixed2.vcf.gz Vcf
updatedfixed2.vcf.gz.tbi Vcf
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