Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A data mining paradigm for identifying key factors in biological processes using gene expression data

ABSTRACT: RNA-Seq was performed on the mouse keratinocyte cultures with Sbsn knockeddown to study the role of Sbsn in the regulation of epidermis devleopment.

ORGANISM(S): Mus musculus

PROVIDER: GSE100100 | GEO | 2018/05/31

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

A data mining paradigm for identifying key factors in biological processes using gene expression data.

Project description: Not available

| S-EPMC5998123 | biostudies-literature

Identifying key variables in African American adherence to colorectal cancer screening: the application of data mining.

Project description: Not available

| S-EPMC4256804 | biostudies-other

Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes.

Project description: Not available

| S-EPMC4480927 | biostudies-literature

Identifying novel biomarkers through data mining-a realistic scenario?

Project description: Not available

| S-EPMC4833187 | biostudies-literature

TF-finder: a software package for identifying transcription factors involved in biological processes using microarray data and existing knowledge base.

Project description: Not available

| S-EPMC2930629 | biostudies-literature

Deciphering the biological processes underlying tomato biomass production and composition.

Project description:After tomato fruits harvesting huge amounts of biomass residues, including plant and immature fruit, remaining in the field can be utilized to produce bioenergy. Little is known about the molecular aspects underlying tomato plant biomass production and hydrolysis. To identify genes involved in the regulation of plant biomass accumulation and composition, two Solanum pennellii introgression lines (ILs) with contrasting phenotypes for plant architecture and biomass characteristics, were analyzed. A multiple approach aimed to characterize such near-isogenic lines was carried out for studying gene expression dynamics, microscopy cell traits and qualitative and quantitative cell wall chemical compounds variation. Transcriptomic analysis showed that the enhanced biomass production observed in IL2-6 line is due to a more effective coordination of chloroplast and mitochondria energy fluxes (photosynthesis, cell division, cell wall and hormone metabolism activation). In parallel, microscopy analysis revealed a higher number of cells and chloroplasts in leaf epidermis in the high biomass line whilst chemical measurements on the two lines pointed out striking differences in the cell wall composition and organization. Taken together, our findings shed light on the mechanisms underlying the tomato biomass production and open new routes for improving the tomato lignocellulosic processability.

2019-03-17 | GSE128409 | GEO

Biblio-MetReS for user-friendly mining of genes and biological processes in scientific documents.

Project description: Not available

| S-EPMC3940481 | biostudies-literature

SAGE profiles from cultured keratinocytes and human epidermis

Project description:SAGE libraries from cultured, differentiated keratinocytes and human epidermis, both normal and affected by actinic keratosis Keywords = Keratinocyte, Epidermis, Homo sapiens, Actinic Keratosis, TNF alpha

2002-02-22 | GSE31 | GEO

SAGE profiles from cultured keratinocytes and human epidermis

2002-02-21 | E-GEOD-31 | biostudies-arrayexpress

Identifying pathogenic processes by integrating microarray data with prior knowledge.

Project description: Not available

| S-EPMC4006456 | biostudies-literature