Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Imidazole-4-carboxamide (ICA) effect on Oryza sativa

ABSTRACT: Fairy rings are zones of stimulated grass growth by the interaction between the fungi and the plant. In the previous research, we reported the identification of the “fairy”, ICAproduced by the fairy ring-forming fungus and the mechanism of its growth-inhibiting activity using DNA microarray. We invetigate expression profiling of rice seedlings treated with ICA for the mechanism of its growth-inhibiting activity.

ORGANISM(S): Oryza sativa

PROVIDER: GSE100899 | GEO | 2019/07/26

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

AHX and AOH effect on Oryza sativa

Project description:Fairy rings are zones of stimulated grass growth by the interaction between the fungi and the plant. In the previous research, we reported the identification of the “fairy”, 2-azahypoxanthine (AHX), produced by the fairy ring-forming fungus and the mechanism of its growth-promoting activity using DNA microarray. We discovered AOH, a common metabolite of AHX in plants. We investigate expression profiling of rice seedlings treated with AHX or AOH for the mechanism of their growth-promoting activity.

2014-01-01 | GSE38844 | GEO

AHX and AOH effect on Oryza sativa

Project description:Fairy rings are zones of stimulated grass growth by the interaction between the fungi and the plant. In the previous research, we reported the identification of the M-bM-^@M-^\fairyM-bM-^@M-^], 2-azahypoxanthine (AHX), produced by the fairy ring-forming fungus and the mechanism of its growth-promoting activity using DNA microarray. We discovered AOH, a common metabolite of AHX in plants. We investigate expression profiling of rice seedlings treated with AHX or AOH for the mechanism of their growth-promoting activity. Three-condition experiment, control vs. AHX-treated rice (50 and 200 mM) and AOH-treated rice (50 and 200 mM).

2014-01-01 | E-GEOD-38844 | biostudies-arrayexpress

Gene expression in transgenic line overexpressing Arabidopsis AT5G40830 (ICA)

Project description:To investigate the genome-wide effects of ica transgenic line overexpressing AT5G40830 (ICA) involved in the cambial activity and shoot growth, we used cDNA microarrays to establish global changes in the gene expression. We selected the uppermost 1 cm of vegetative nodes in the inflorescence stems at the sixth silique stage. These showed the most distinctive changes in phenotypes and endogenous hormone levels between ica and Col-0. Expression of 9 genes (ARR5, ARR6, ARR7, EXP1, GASA4, GASA6, PME1, PME44, AT3G49220) based on microarray analysis was quantified by real-time PCR.

2016-08-31 | GSE78134 | GEO

Intrinsic cardiac adrenergic (ICA) cells contribute to LPS-induced myocardial dysfunction

Project description:The role of ICA cells in septic cardiomyopathy is unknown. Here we show that norepinephrine (NE) secretion from ICA cells is increased through activation of Toll-like receptor 4 (TLR4) to aggravate myocardial TNF-α production and dysfunction by lipopolysaccharide (LPS). In ICA cells, LPS activated TLR4-MyD88/TRIF-AP-1 signaling that promoted NE biosynthesis through expression of tyrosine hydroxylase, but did not trigger TNF-α production due to impairment of p65 translocation. Our findings suggest that ICA cells may be a potential therapeutic target for septic cardiomyopathy.

2022-02-02 | GSE189964 | GEO

Indole-3-carboxaldehyde (ICA) mitigates morbidity and mortality in a mouse model of Graft-versus-Host-Disease

Project description:ICA-treatment following allogeneic bone marrow transplant in mice limited GvHD pathology and GVHD mortality, augmented the integrity of the intestinal mucosal barrier, and limited production of inflammatory cytokines, but did not compromise donor T cell-mediated Graft vs. Leukemia (GvL) responses. Following protracted exposure, ICA treatment also induced donor-strain-specific tolerance of engrafted T cells. We used microarray to assess gene expression changes induced by ICA in the small intestine in animals with GvHD.

2018-03-08 | GSE111512 | GEO

Oryza sativa

Project description:Imidazole-4-carboxamide (ICA) effect on Oryza sativa

| PRJNA393400 | ENA

Bacillus thuringiensis strain:Bt-ICA/UNMSM10RA

Project description:Bacillus thuringiensis strain:Bt-ICA/UNMSM10RA Genome sequencing and assembly

| PRJNA448338 | ENA

Oryza sativa-Magnaporthe grisea interaction

Project description:5 leaves old rice plantlets were infected with Magnaporthe grisea spores and zero, two hours and twenty four houres after infection samples were collected

2014-01-31 | GSE50454 | GEO

Transcriptome analysis of gibberellin-signaling mutants in rice [Oryza sativa]

Project description:Gibberellins control a wide range of aspects of plant growth and development. Although a series of mutant of the signaling pathway has been identified, the global regulatory network underlying gibberellin signal transduction has not been revealed. To address this issue, we performed microarray analysis with rice gibberellin signaling mutants, gid1, gid2, slr, and the parental cultivar Taichung 65.

2009-04-21 | GSE15046 | GEO

mRNA sequencing of whole 15 d old Oryza sativa shoots

Project description:The rice gene SUB1A-1 confers flooding tolerance restricting shoot growth during submergence. Rice with SUB1A also show more rapid recovery after submergence ends, but mechanisms by which SUB1A improves recovery from submergence had not been examined. In this study, the transcriptome was sequenced at five time points over a 24 hour submergence recovery period in near-isogenic rice genotypes with and without SUB1A.

2017-09-01 | GSE102494 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data