Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide mapping of SHORT LIFE (SHL) binding sites in Arabidopsis thaliana

ABSTRACT: A total of 1,942 loci were identified as SHL targets

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE104369 | GEO | 2018/07/20

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Genome-wide mapping of SHORT LIFE (SHL) binding sites in Arabidopsis thaliana

Project description:Genome-wide mapping of SHORT LIFE (SHL) binding sites in Arabidopsis thaliana

| PRJNA412462 | ENA

Genome-wide mapping of EARLY BOLTING IN SHORT DAYS (EBS) binding sites in Arabidopsis thaliana

Project description:A total of 2,356 genes were identified as EBS target loci by ChIP-seq

2018-07-20 | GSE104368 | GEO

Expression data from Arabidopsis thaliana WT (Ler), ebs and shl-2 mutants grown in short day conditions

Project description:We performed a tranascriptomic analysis of Ler, ebs and shl-2 plants in order to reveal targets whose transcription is regulated by EBS and SHL. The analysis was performed in WT plants (Ler), as well as mutants plants in which the expression of EBS and SHL was previously shown to be null, namely ebs and shl-2 mutant. To perform this study, plants were grown for 18 days under short days (SD) conditions (8h light, 16h darkness) in MS solid media. Three independent biological samples were hybridized separately.

2014-10-14 | E-GEOD-33270 | biostudies-arrayexpress

Genome-wide mapping of BES1 binding sites in Arabidopsis thaliana

Project description:Brassinosteroids (BRs) are important regulators for plant growth and development. BRs signal to control the activities of the BES1 and BZR1 family transcription factors. In order to further understand the mechanism by which BES1/BZR1 regulates downstream genes, we performed chromatin immunoprecipitation coupled with tiling arrays (ChIP-chip) to identify BES1 binding sites in the genome. By combining ChIP-chip data with gene expression microarray data, we are able to discover genes that are directly regulated by BES1 (i.e. BES1 target genes).

2011-01-02 | GSE24684 | GEO

Genome-wide mapping of BES1 binding sites in Arabidopsis thaliana

2011-01-02 | E-GEOD-24684 | biostudies-arrayexpress

Genome-wide mapping of alternative splicing in Arabidopsis thaliana.

Project description: Not available

| S-EPMC2798830 | biostudies-literature

Expression data from Arabidopsis thaliana WT (Ler), ebs and shl-2 mutants grown in SD conditions

Project description:We performed a tranascriptomic analysis of Ler, ebs and shl-2 plants in order to reveal targets whose transcription is regulated by EBS and SHL.

2014-10-14 | GSE33270 | GEO

Genome-wide ATAF1 binding sites in Arabidopsis thaliana

Project description:Using a transgenic line expressing HA-tagged ATAF1 uncovered >400 ChIP-seq peaks in ATAF1-HA plants compared to Col-0 wild-type plants. Only a small sub-set of the candidate peaks could be verified using ChIP-qpcr or EMSA. Among the verified peaks we uncovered the key ABA biosynthetic gene NCED3 as a target of ATAF1

2014-01-01 | GSE43637 | GEO

Genome-wide GTL1 binding sites in Arabidopsis thaliana

Project description:To understand how GTL1 regulates cell growth, we first identified its potential direct targets by the chromatin immunoprecipitation followed by the hybridization on an Affymetrix Arabidopsis Tiling 1.0R array (ChIP-chip). To enrich the genomic region bound by GTL1 in vivo, we harvested whole aerial parts of 12-day-old gtl1-1 plants complemented with the pGTL:GTL1:GFP constructs and immunoprecipitated the chromatin fragments associated with GTL1-GFP proteins using antibodies against GFP. After applying a cut-off P-values of 0.001of MAT (Model-based analysis of tiling array), we identified a total number of 3,900 putative immediate target genes that showed consistent binding by GTL1.

2013-08-01 | GSE40519 | GEO

RNA-seq analysis of emf1, lhp1, ebs shl and ebs shl lhp1 transcriptomes in Arabidopsis thaliana

Project description:By RNA deep sequencing, around 11,000 genes were found to be differentially expressed in ebs shl lhp1 compared with wild type, and SHL and EBS, together with LHP1 and EMF1, co-regulate the expression of thousands of gene in Arabidopsis

2018-07-20 | GSE104370 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data