Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Iron deficiency (-Fe) effect: Arabidopsis roots

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE10576 | GEO | 2008/04/24

SECONDARY ACCESSION(S): PRJNA107839

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

CAN OF SPINACH, a novel long non-coding RNA, affects iron deficiency responses in Arabidopsis thaliana

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-09-15 | GSE209595 | GEO

Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots

Project description:We performed a time course analysis (TC data set) of the response of whole seedling roots to -Fe at 6 time points after transfer (3, 6, 12, 24, 48, and 72 hours). Little is known about how developmental cues affect the way cells interpret their environment. Here we characterize the transcriptional response of different cell layers and developmental stages of the Arabidopsis root to high salinity and find that transcriptional responses are highly constrained by developmental parameters. These transcriptional changes lead to the differential regulation of specific biological functions in subsets of cell-layers, several of which correspond to observable physiological changes. We show that known stress pathways primarily control semi-ubiquitous responses and use mutants that disrupt epidermal patterning to reveal cell-layer specific and inter-cell-layer effects. By performing a similar analysis using iron-deprivation we identify common cell-type specific stress responses and environment-independent biological functions that define each cell type. Keywords: time course analysis

2008-04-24 | GSE10502 | GEO

Differential transcription of Geobacter sulfurreducens cells growing with Fe(III) oxide, Mn(IV) oxide or Fe(III) citrate provided as electron acceptor

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2012-12-15 | E-GEOD-42920 | biostudies-arrayexpress

Expression data from elicitor-treated Arabidopsis seedling roots

Project description:This SuperSeries is composed of the SubSeries listed below.

2016-09-23 | GSE87217 | GEO

Impaired sensing of Fe status in opt3-2 leads to opposite transcriptional programs in leaves and roots, and uncovers novel roles for reactive oxygen species signaling within the Fe homeostasis network

Project description:This SuperSeries is composed of the SubSeries listed below.

2019-03-14 | GSE128157 | GEO

Transcription profiling of Arabidopsis roots after Iron deficiency

Project description:This SuperSeries is composed of the following subset Series:; GSE10496: Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe); GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment; GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment; GSE10502: Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots Experiment Overall Design: Refer to individual Series

2008-06-11 | E-GEOD-10576 | biostudies-arrayexpress

RNA-sequencing analysis of the OsIMA overexpression and knockdown rice lines and Fe deficiency responsiveness of non-transformant (NT) rice

Project description:This SuperSeries is composed of the SubSeries listed below.

2020-11-23 | GSE151941 | GEO

Heme regulates the development of iron-recycling macrophages from monocytes

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2014-03-14 | E-GEOD-46985 | biostudies-arrayexpress

Analysis of the iron stimulon and fur regulon of Geobacter sulfurreducens

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2014-03-10 | E-GEOD-54306 | biostudies-arrayexpress

Regulatory chromatin landscape in Arabidopsis thaliana roots uncovered by coupling INTACT and ATAC-seq

Project description:This SuperSeries is composed of the SubSeries listed below.