Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRNA sequencing of msh1 memory line in arbidopsis

ABSTRACT: MSH1 depletion caused whole genome wide gene expression changes in Arabidopsis, to conduct comparative genomic analysis, here we generate gene expression profile for wild type and msh1 memory line

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE106536 | GEO | 2018/06/01

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Bisulfite methylome sequencing of msh1 memory line in tomato

Project description:MSH1 depletion caused whole genome wide Methylome changes in Arabidopsis, to conduct comparative genomic analysis, here we generate methylome for MSH1-RNAi line and transgene segregated out msh1 memory line in tomato

2018-06-30 | GSE105008 | GEO

Bisulfite methylome sequencing of msh1 memory line in arbidopsis [Bisulfite-seq]

2018-06-01 | GSE106309 | GEO

mRNA sequencing of msh1 memory line in Arabidopsis

Project description:Germination of the memory line and isogenic Col-0 wild type on media containing 100 uM 5-azacytidine alleviated the phenotype differences between the two lines, resulting in similar growth rates, here we generate gene expression profile for wild type and msh1 memory line under 100 uM 5-azacytidine treatment to investigate the effect of 5-azacytidine on msh1 memory gene expression profile

2019-01-12 | GSE109164 | GEO

mRNA sequencing of msh1 memory line in Arabidopsis

Project description:mRNA sequencing of msh1 memory line in Arabidopsis

| PRJNA429824 | ENA

Bisulfite (methylome) sequencing of msh1 memory line treated with 5-azacytidine in Arabidopsis

Project description:Germination of the memory line and isogenic Col-0 wild type on media containing 100 uM 5-azacytidine alleviated the phenotype differences between the two lines, resulting in similar growth rates. Here we generate methylome profile for wild type and msh1 memory line under 100 uM 5-azacytidine treatment to investigate the effect of 5-azacytidine on msh1 memory line methylation profile.

2019-05-18 | GSE114665 | GEO

mRNA sequencing of msh1 memory line in arbidopsis

Project description:mRNA sequencing of msh1 memory line in arbidopsis

| PRJNA417181 | ENA

MSH1 disruption in plants triggers RdDM-mediated reprogramming of phenotypic plasticity (Bisulfite-Seq II)

Project description:To generate msh1 memory revertant population, msh1 memory plant was used to pollinate Col-0 to generate F1 population. Derived F1 progenies were self-pollinated to generate F2 populations. F2 plants were self-pollinated to produce F3 families that were segregationg for the msh1 memory phenotype (small dwarf plants with delayed flowering).

2022-07-08 | GSE192432 | GEO

Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) sequencing of msh1 memory line

Project description:Col-0 wild type and msh1 memory line were grown, crosslinked and chromatin isolated as described in (Omidbakhshfard et al., 2014). Briefly, plants were germinated in MS media at 24°C, 12 hr light and 12 hr dark cycle for 14 days and crosslinked with formaldehyde. DNA was sonicated to get a size range of 250-800bp. Samples were divided equally into two lots and one was used directly for FAIRE experiments while the other lot was decrossed-linked and compared with the crosslinked samples to confirm he FAIRE treatment. FAIRE analysis was carried out on crosslinked sampes of wild ype and msh1 memory line.

2019-05-18 | GSE114664 | GEO

mRNA sequencing of msh1 memory line and non-memory (normal looking) sibling plants with isogenic Col-0 wild-type control in Arabidopsis

Project description:Col-0 plants were transformed with MSH1 RNAi construct. Transgene positive plant was self pollinated and transgene was segregated in subsequent generation, and screened for presence of transgene using PCR assay. Of transgene null plants, 20% plants displayed delayed in flowering, smaller in size, and lighter green termed as memory phenotype. Memory plants were self pollinated for six generations and plants from generation 1 and 5 were sequenced for RNASeq.

2020-04-03 | GSE129343 | GEO

Bisulfite methylome sequencing of msh1 memory line in tomato

Project description:Bisulfite methylome sequencing of msh1 memory line in tomato

| PRJNA414412 | ENA