Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRNA sequencing of 4 week old leaves in Arabidopsis wild type and ABI3:MTA

ABSTRACT: In order to gain insight into abundance of transcripts in the presence and absence of m6A, we performed an mRNA sequencing expirement in both mta and Col-0 plants.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE108764 | GEO | 2018/11/09

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Profiling of N6-methyladenosine (m6A) in Arabidopsis wild type and ABI3:MTA

Project description:In order to gain insight into abundance of transcripts in the presence and absence of m6A, we performed an mRNA sequencing expirement in both mta and Col-0 plants.

2018-11-09 | GSE108765 | GEO

GMUCT sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants

Project description:In order to gain insight into relative stability of transcripts in plants that lacked m6A, we performed global mapping of uncapped and cleaved transcripts

2018-11-09 | GSE108766 | GEO

mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana [m6A_IP]

Project description:We performed m6A-RNA immunoprecipitation followed by sequencing (m6A-IP Seq) using libraries produced with unfragmented ployA+ RNA from 4 week old WT Col-0 and mta plants.

2020-09-21 | GSE122525 | GEO

Protein-interaction profile sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants.

Project description:In order to investigate the influence of m6A on RNA secondary-structure and RNA-protein interactions, we performed protein-interaction profile sequencing (PIP-seq)

2018-11-09 | GSE108767 | GEO

mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana [smallRNAs]

Project description:In order to assess the possible effects of m6A on miRNA biogenesis we performed small RNA (sRNA) sequencing to compare their levels in WT Col-0 plants to those in mutant lines with severely reduced m6A levels. The reduced mta line contains MTA cDNA under the ABI3 promoter in MTA null mutant background (ABI3:MTA) and ABI3 being an embryo specific promoter rescues the embryo lethal phenotype of MTA knockout while keeping the levels of MTA in mature plants severely low34. sRNAs isolated from 4 week old WT and mta plants were used to make libraries that were sequenced using HiSeq® (Illumina) and the results were analyzed using NOISeq package in R-Studio.

2020-09-21 | GSE122526 | GEO

GMUCT sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants

Project description:GMUCT sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants

| PRJNA428514 | ENA

mRNA sequencing of 4 week old leaves in Arabidopsis wild type and ABI3:MTA

Project description:mRNA sequencing of 4 week old leaves in Arabidopsis wild type and ABI3:MTA

| PRJNA428511 | ENA

Protein-interaction profile sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants.

Project description:Protein-interaction profile sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants.

| PRJNA428513 | ENA

N6-methyladenosine mRNA methylomes in the MTA RNAi strawberry fruits and the controls

Project description:For exploring the influence of the m6A methyltransferase gene MTA silencing in the global m6A mRNA methylomes of strawberry fruits, we performed m6A-seq in the MTA RNAi strawberry fruits (RNAi-MTA) and the controls with three independently biological replicates. Results showed that MTA silencing induces the m6A hypomethylation of thousands of transcripts, including those of ripening and ABA pathway genes.

2021-05-20 | GSE174703 | GEO

mRNA sequencing of 4 week old leaves in salt-treated and control Arabidopsis

Project description:In order to gain insight into abundance of transcripts in the presence and absence of m6A in control and salt stress, we performed an mRNA sequencing experiment in control and salt treated plants

2018-11-09 | GSE116332 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data