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ALV-J and REV synergistically increase the accumulation of miRNAs

ABSTRACT: The aim of this study was to identify the miRNAs in CEF in response to synergistic infection of ALV-J and REV, as well as attempt to reveal the mechanism underlying pathogenesis and immune suppression symptoms.

ORGANISM(S): Gallus gallus

PROVIDER: GSE109105 | GEO | 2018/01/11

SECONDARY ACCESSION(S): PRJNA429641

REPOSITORIES: GEO

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ALV-J and REV synergistically increase the accumulation of miRNAs

Project description:ALV-J and REV synergistically increase the accumulation of miRNAs

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TMT-based proteomic analysis reveals integrins involved in the synergistic infection of reticuloendotheliosis virus and avian leukosis virus subgroup J

Project description:Comparative analysis of proteome proflings of ALV-J and REV infected and coinfected CEF cells were conducted in this project. We believe this manuscript is valuable for all the researchers who are interested in coinfection with ALV-J and REV.

2022-02-09 | PXD031503 | iProX

RNA-Seq for ALV-J-susceptible and ALV-J-resistant chickens

Project description:We bed ALV-J-susceptible and ALV-J-resistant chickens. In this work, we find the different gene expression between ALV-J-susceptible and ALV-J-resistant chickens

2020-12-15 | GSE163135 | GEO

MeDIP-Seq for ALV-J-susceptible and ALV-J-resistant chickens

Project description:We bed ALV-J-susceptible and ALV-J-resistant chickens. In this work, we find the difference DNA methylation states between ALV-J-susceptible and ALV-J-resistant chickens

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RNA-seq Analysis of the target genes of ALV-miR-p19-01 in DF-1 cells

Project description:In order to found the target genes of ALV-miR-p19-01 which encoded by ALV-J, we used RNA-pull down and RNA-seq. The resulted showed there were 917 potential target genes of ALV-miRNA-p19-01 had been identified

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The mechanism research of differentially expressed circRNAs in ALV-J-induced tumor chickens

Project description:In this study, we want to screen differentially expressed circRNAs in ALV-J-induced tumor chickens by circRNA-seq, and then conduct the mechanism research of those important circRNAs in ALV-J-induced tumor chickens

2018-11-10 | GSE99286 | GEO

MeDIP-Seq for ALV-J-susceptible and ALV-J-resistant chickens

Project description:MeDIP-Seq for ALV-J-susceptible and ALV-J-resistant chickens

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RNA-Seq for ALV-J-susceptible and ALV-J-resistant chickens

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Integrated host and viral transcriptome analyses reveal pathology and inflammatory response mechanisms to ALV-J injection in SPF chicken

Project description:Avian leukosis virus (ALV) causes substantial economic losses from mortality and decreased performance in poultry industry. To characterize the response to ALV challenge, we developed a novel methodology that combines four datasets: mRNA expression and their associated regulatory factors of miRNA and lncRNA, and ALV gene expression. Specific Pathogen-Free (SPF) layer chickens were assigned to the ALV-infected or control group. Spleen samples (n=6) were collected at 40 days post injection (dpi), and sequenced. Comparing the infected and non-infected groups, 864 genes, 7 miRNAs and 17 lncRNAs were differentially expressed.

2017-10-04 | E-MTAB-5135 | biostudies-arrayexpress

REV-ERBa and REV-ERBb function as key factors regulating Mammalian Circadian Output

Project description:The circadian clock regulates behavioural and physiological processes in a 24-h cycle. The nuclear receptors REV-ERBa and REV-ERBb are involved in the cell-autonomous circadian transcriptional/translational feedback loops as transcriptional repressors. A number of studies have also demonstrated a pivotal role of REV-ERBs in regulation of metabolic, neuronal, and inflammatory functions including bile acid metabolism, lipid metabolism, and production of inflammatory cytokines. Given the multifunctional role of REV-ERBs, it is important to elucidate the mechanism through which REV-ERBs exert their functions. To this end, we established a Rev-erba/Rev-erbb double-knockout mouse embryonic stem (ES) cell model and analyzed the circadian clock and clock-controlled output gene expressions. A comprehensive mRNA-seq analysis revealed that the complete knockout of both Rev-erba and Rev-erbb does not abrogate expression rhythms of E-box-regulated core clock genes but drastically changes a diverse set of other rhythmically-expressed output genes. Of note, REV-ERBa/b deficiency does not compromise circadian expression rhythms of PER2, while REV-ERB target genes, Bmal1 and Npas2, are significantly upregulated. This study emphasizes REV-ERBs function to form an essential link between the circadian clock and a wide variety of cellular physiological functions.

2019-07-29 | GSE125696 | GEO

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