Transcriptomics

Dataset Information

47

RNA expression data of inner ear tissues in SOX10 p.R109W mutation pigs with inner ear malformation and wild-type pigs


ABSTRACT: SOX10 (SRY-box 10) mutation may lead to inner ear deformities. However, its molecular mechanisms on inner ear development are not clear. In this work. The inner ear morphology was investigated at different embryonic stages of the SOX10 mutation miniature porcine model with sensorineural hearing loss, and high-throughput RNA-seq and bioinformatics analyses were applied. Our results indicated that the SOX10 mutation in the miniature pigs led to an incomplete partition of the cochlea, a cystic apex caused by fusion from middle and apical turns, cochlear modiolar defects and a shortened cochlear duct. The model demonstrated 173 DEGs and 185 lncRNAs. The down-regulated DEGs most significantly enriched the inflammatory mediator regulation of the TRP channels, arachidonic acid metabolism, and the salivary secretion pathways, while the up-regulated DEGs most significantly enriched the systemic lupus erythematosus and alcoholism pathways. Based on gene cluster analysis, we selected four gene groups: WNT1, KCNQ4, STRC and PAX6. Overall design: Otic expression profiles of embryonic 28-day old wild type (WT) and SOX10 p.R109W mutation pigs were generated by high throughput sequencing.

INSTRUMENT(S): Illumina HiSeq 3000 (Sus scrofa)

ORGANISM(S): Sus scrofa  

SUBMITTER: hao qingqing   

PROVIDER: GSE110103 | GEO | 2018-06-21

REPOSITORIES: GEO

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Publications

Key Genes and Pathways Associated With Inner Ear Malformation in SOX10  p.R109W Mutation Pigs.

Hao Qing-Qing QQ   Li Liang L   Chen Wei W   Jiang Qing-Qing QQ   Ji Fei F   Sun Wei W   Wei Hong H   Guo Wei-Wei WW   Yang Shi-Ming SM  

Frontiers in molecular neuroscience 20180605


SRY-box 10 (SOX10) mutation may lead to inner ear deformities. However, its molecular mechanisms on inner ear development are not clear. In this work, the inner ear morphology was investigated at different embryonic stages of the SOX10 mutation miniature porcine model with sensorineural hearing loss, and high-throughput RNA-seq and bioinformatics analyses were applied. Our results indicated that the SOX10 mutation in the miniature pigs led to an incomplete partition (IP) of the cochlea, a cystic  ...[more]

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