Genomics

Dataset Information

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MRNA sequencing of live and encysting cells of Colpoda aspera


ABSTRACT: The goals of this study is to investigate the encystment mechanism. Overall design: Compare the expression of genes between two samples.

INSTRUMENT(S): Illumina HiSeq 2000 (Colpoda aspera)

ORGANISM(S): Colpoda aspera  

SUBMITTER: Wei Miao  

PROVIDER: GSE111498 | GEO | 2018-07-16

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
GSE111498_FPKM.txt.gz Txt
GSE111498_Trinity.fasta.gz Fasta.gz
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Publications

Transcriptome Analysis Reveals the Molecular Mechanism of Resting Cyst Formation in Colpoda aspera.

Jiang Chuanqi C   Wei Wei W   Yan Guanxiong G   Shi Tuanyuan T   Miao Wei W  

The Journal of eukaryotic microbiology 20180701 2


Resting cyst formation is a remarkable survival strategy used by ciliates in response to the adverse environmental conditions. However, the mechanisms underlying encystment are poorly understood. Here, the genetic basis of encystment in Colpoda aspera was examined through RNA sequencing to identify transcriptome-wide changes in gene expression between vegetative and encystment stages. After de novo assembly, 49,543 transcripts were identified. Gene annotation and pathway mapping analysis reveale  ...[more]

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