Transcriptomics

Dataset Information

43

Transcriptional analysis of respiratory pathways in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum


ABSTRACT: We compared global transcriptional patterns in Pyrobaculum aerophilum cultures with oxygen, nitrate, arsenate and ferric iron as respiratory electron acceptors to identify genes and regulatory patterns that differentiate these pathways. Keywords: Time course study with different respiratory electron acceptors Overall design: To focus the microarrays on genes that are specifically affected by changes in terminal electron acceptors we analyzed gene expression in time courses with cultures shifted from aerobic growth to either NO3-, As(V), Fe(III)-citrate, or additional O2. Gene expression and substrate usage were measured at three time points (2.5, 4.5, and 7.5 hours), allowing sufficient time for changes in gene expression, while restricting cultures to a maximum of one or two cell divisions.

INSTRUMENT(S): Pyrobaculum aerophilum full-genome spotted PCR fragment microarray

ORGANISM(S): Pyrobaculum aerophilum  

SUBMITTER: Aaron E Cozen 

PROVIDER: GSE11366 | GEO | 2009-01-23

SECONDARY ACCESSION(S): PRJNA106587

REPOSITORIES: GEO

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