Genomics

Dataset Information

2

Arabidopsis thaliana leaf parallel analysis of RNA ends


ABSTRACT: Arabidopsis thaliana leaf parallel analysis of RNA ends Overall design: Three Arabidopsis thaliana leaf degradome replicates were constructed using wild type Columbia (Col-0) plants

INSTRUMENT(S): Illumina HiSeq 2000 (Arabidopsis thaliana)

SUBMITTER: Josh Thody  

PROVIDER: GSE113958 | GEO | 2018-06-25

REPOSITORIES: GEO

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Publications

PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules.

Thody Joshua J   Folkes Leighton L   Medina-Calzada Zahara Z   Xu Ping P   Dalmay Tamas T   Moulton Vincent V  

Nucleic acids research 20180901 17


Small RNAs (sRNAs) are short, non-coding RNAs that play critical roles in many important biological pathways. They suppress the translation of messenger RNAs (mRNAs) by directing the RNA-induced silencing complex to their sequence-specific mRNA target(s). In plants, this typically results in mRNA cleavage and subsequent degradation of the mRNA. The resulting mRNA fragments, or degradome, provide evidence for these interactions, and thus degradome analysis has become an important tool for sRNA ta  ...[more]

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