Dataset Information


Arabidopsis thaliana leaf parallel analysis of RNA ends

ABSTRACT: Arabidopsis thaliana leaf parallel analysis of RNA ends Overall design: Three Arabidopsis thaliana leaf degradome replicates were constructed using wild type Columbia (Col-0) plants

INSTRUMENT(S): Illumina HiSeq 2000 (Arabidopsis thaliana)

SUBMITTER: Josh Thody  

PROVIDER: GSE113958 | GEO | 2018-06-25


Dataset's files

Action DRS
GSE113958_RAW.tar Raw
filelist.txt Txt
Items per page:
1 - 2 of 2
altmetric image


PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules.

Thody Joshua J   Folkes Leighton L   Medina-Calzada Zahara Z   Xu Ping P   Dalmay Tamas T   Moulton Vincent V  

Nucleic acids research 20180901 17

Small RNAs (sRNAs) are short, non-coding RNAs that play critical roles in many important biological pathways. They suppress the translation of messenger RNAs (mRNAs) by directing the RNA-induced silencing complex to their sequence-specific mRNA target(s). In plants, this typically results in mRNA cleavage and subsequent degradation of the mRNA. The resulting mRNA fragments, or degradome, provide evidence for these interactions, and thus degradome analysis has become an important tool for sRNA ta  ...[more]

Similar Datasets

| PRJNA454678 | ENA
1000-01-01 | S-EPMC4391269 | BioStudies
2016-11-30 | GSE77549 | GEO
1000-01-01 | S-EPMC4233892 | BioStudies
2012-07-05 | E-GEOD-34318 | BioStudies
2004-01-01 | S-EPMC4242175 | BioStudies
2012-12-28 | E-MTAB-4387 | BioStudies
2018-01-01 | S-EPMC6280765 | BioStudies
2021-01-01 | S-EPMC7935932 | BioStudies
2020-01-01 | S-EPMC7230965 | BioStudies